Archive for August, 2007
New Compounds With Anti-Inflammatory Properties Discovered Through Expansive PhytoLogix(TM) Botanical Library
Last Updated on Thursday, 30 August 2007 12:04 Written by Fred Thursday, 30 August 2007 12:04
Lacey, WA – Researchers utilizing one of the world’s largest ethnomedicinal plant libraries recently developed two highly potent flavonoid formulas which convey topical anti-inflammatory effects. The botanicals, a catechin derived from the catechu tree and baicalin extracted from Chinese skullcap, were combined in two different formula ratios and then evaluated for anti-inflammatory and antioxidant effects. The findings1 were shared at the annual meeting of The Society for Investigative Dermatology in May.
The formulas are the final result of screening through the PhytoLogix™ library at UNIGEN® USA, a leading natural products research and development company and proprietary ingredients supplier. Utilizing PhytoLogix, researchers screened over 1,230 organic plant extracts for potential COX-2 inhibition. The final catechin and baicalin formulas, UP566S and UP566U, demonstrated significant COX-1 and COX-2 inhibitory effects. In an in vitro test using human cells, UP566U was far more effective than Ibuprofen in acting as a LOX (5-lipoxygenase) pathway inhibitor.
“These two compounds offer multiple anti-inflammatory properties. They are a completely natural and safe approach to dealing with topical inflammation,†commented Dr. Qi Jia, Chief Scientific Officer at UNIGEN. Dr. Jia explained that the
compounds demonstrated an ability to suppress the gene expression of key pro-inflammatory cytokines, and UP566S also showed antioxidant activity almost four times more powerful than vitamin C, based on ORAC test results. In a human trial, both topicals also tested negative for any skin irritation or photosensitivity.
The Company’s President and CEO, Regan Miles, was impressed with the speed at which the team was able to develop their ideas. “They created the formulas rather rapidly due to the comprehensive data available through PhytoLogix,†said Miles. “We can access not only the chemical structure of a certain botanical, but also information about all of the plant’s traditional health uses too. We’re seeing this research build on itself exponentially every day.â€Â
About Unigen Pharmaceuticals, Inc.
www.unigenUSA.com – Unigen Pharmaceuticals, Inc. is a leading natural products research and development company and proprietary ingredients supplier. The Company is dedicated to the discovery of botanically derived therapeutic compounds that address consumer health needs and help improve quality of life.
Their research and discovery includes extensive work at both the human cell and gene level. Unigen focuses on identifying and studying the unique ingredients of medicinal botanicals and then formulating proprietary raw materials for use in cosmeceutical, nutraceutical, functional food and pharmaceutical products.
Unigen’s global offices include 80 employees, 55 of whom are scientists. Contributing to their vast library of novel botanical ingredients, the current facilities include high-throughput screening and cell culture labs, bioprospecting labs and a large-scale manufacturing facility. Unigen is part of the ECONET global family of health and natural product companies, which has operations in the United States, Canada, Korea, Mexico, Russia and China.
Biomanufacturing Summit, North America December 10 & 11, 2007
Last Updated on Wednesday, 29 August 2007 01:25 Written by admin Wednesday, 29 August 2007 01:25
The Biomanufacturing Summit, North America brings together the world’s leading biopharmaceutical companies to network, learn and conduct business. Key conference topics include: PAT in biologics, overcoming downstream bottlenecks, continuous chromatography, using disposables and overcoming the challenges in purifying MABs. Don’t miss the opportunity to be a part of this influential and informative meeting.
For more information, visit www.biomanufacturingsummit.com or call 1 416 214 340
Posted under Press Releases, USA and Canada | No Comments
Upstream Biosciences Acquires Innovative Platform Technology and Drug Candidates for Tropical Parasitic Diseases
Last Updated on Wednesday, 29 August 2007 01:19 Written by Fred Wednesday, 29 August 2007 01:19
-Acquisition of Pacific Pharma Technologies Brings Proprietary Artificial Intelligence-Based Drug Discovery Platform and Novel Drug Candidates to Upstream–Initial Compounds Demonstrate Promising In Vitro Activity Against Devastating Parasitic Diseases Affecting 300 Million People Worldwide-
VANCOUVER, B.C., Aug. 27 /PRNewswire-FirstCall/ — Upstream Biosciences Inc. today announced it has completed the acquisition of Pacific Pharma Technologies Inc., an early stage biopharmaceutical company with a proprietary technology platform that combines artificial intelligence, advanced computational methods and chemical diversity techniques to discover new drugs. This technology has already generated novel compounds that in laboratory studies demonstrate both human and veterinary potential against major tropical parasitic diseases.
“This acquisition significantly broadens our strategic focus and provides Upstream with important new capabilities,” said Joel L. Bellenson, Chief Executive Officer of Upstream. “We believe the innovative technology platform pioneered by Pacific Pharma may have substantial commercial potential in a number of therapeutic areas and it fits well with our existing core competencies in computational-based approaches to biomarker identification. Pacific Pharma has also generated novel compounds that have exhibited activity against targets relevant to cancer, the focus of our biomarker programs.”
In screening studies in vitro, Pacific Pharma’s lead compounds have demonstrated encouraging signs of efficacy against leishmaniasis and African sleeping sickness (trypanosomiasis). These parasites, which belong to a family of protozoa species that include Chagas disease and malaria, infect millions of individuals in Africa, South Asia and South America. Current treatments are often toxic, ineffective, inconvenient and expensive. In addition, recent reports document the spread of leishmaniasis to U.S. troops and contractors in Iraq and Afghanistan. Upstream also intends to begin screening compounds against malaria shortly and to test compounds from related classes as potential therapies for tuberculosis. The millions of individuals affected by these two diseases are increasingly infected with multiple drug resistant strains, highlighting the need for new therapies.
Mr. Bellenson continued, “These parasitic diseases take an enormous personal, social and economic toll on communities in the developing world, affecting millions of individuals and also decimating the cattle herds that are an integral part of rural economies. We believe the growing interest in addressing global health issues makes this an ideal time to pursue new drugs for these devastating conditions, and we intend to work collaboratively with a variety of public and private organizations to ensure the timely and cost effective clinical development of drug candidates generated by our new technology platform. We also expect to pursue other therapeutic applications of this potentially powerful drug discovery technology going forward.”
Pacific Pharma’s proprietary technology platform takes existing compounds that have demonstrated efficacy against the target disease and uses artificial intelligence, computer simulation and pattern recognition techniques to identify key structural elements associated with their efficacy. Screening analyses and diversity generation chemistry are then applied to produce an array of potential drug candidates. The technology can also be used to identify novel applications for existing drugs. It was developed by Artem Cherkasov, Ph.D., a faculty member in the Department of Infectious Diseases in the Faculty of Medicine at the University of British Columbia. At the annual meeting of the American Chemical Society in Boston last week, Dr. Cherkasov gave a scientific presentation describing how this technology may be effective for the rapid identification of drugs that can be used to fight antibiotic- resistant “super-bug” pathogens or emerging new infectious agents.
“This technology is particularly applicable to these difficult-to-treat protozoan diseases because it does not require knowing the disease target a priori,” noted Professor Cherkasov. “By combining state-of-the-art computational approaches with advanced chemistries, we have already demonstrated that we can successfully produce novel compounds with good drug- like properties and the potential for enhanced efficacy and reduced toxicity. I look forward to working with Upstream to advance these promising new drugs into clinical development, as well as to exploring other drug discovery applications of the technology platform.”
Professor Cherkasov is an expert in computer-aided drug design, in applications of artificial intelligence to structure-activity modeling for bioactive substances and in the development of large-scale bioinformatics and genomics tools and molecular modeling techniques. He is a member of Upstream’s Scientific Advisory Board.
According to the World Health Organization (WHO), over 300 million people are infected globally by these parasitic diseases, which are responsible for an estimated 2.8 million deaths annually and cause great suffering and economic hardship to millions more. In addition, the combination of global warming and increased migration is beginning to bring these diseases to the developed world. For example, the American Red Cross recently reported that in 2006 it detected blood-borne Chagas pathogens in 1 in every 3,800 blood donors in Los Angeles.
Terms of the acquisition include upfront and milestone payments. Further details were not disclosed.
About Leishmaniasis. Leishmaniasis is a severe, geographically widespread parasitic disease caused by a protozoan flagellate and spread by the bite of infected sand flies. There are several different forms of leishmaniasis— cutaneous and visceral. The cutaneous type causes skin sores, while the visceral type affects internal organs such as the spleen, liver and bone marrow. Leshmaniasis is increasing in incidence with an estimated two million cases per year, and 350 million people in 88 countries are estimated to be at risk. More than 90% of the world’s cases of visceral leishmaniasis are in India, Bangladesh, Nepal, Sudan, and Brazil. Leishmaniasis is also found in Mexico, Central America, and South America. Visceral leishmaniasis can be lethal if untreated.
About African Sleeping Sickness (Trypanosomiasis). Sleeping sickness is a parasitic disease in people and animals caused by protozoa of the Trypanosomiasis genus and transmitted by the tsetse fly. The disease is endemic in regions of sub-Saharan Africa covering 36 countries and 60 million people. There are an estimated 300,000 new cases each year. Early symptoms include anemia, endocrine, cardiac, and kidney disorders. The symptoms of the second neurological phase give the disease its name; besides confusion and reduced coordination, the sleep cycle is profoundly disturbed. Without treatment, the disease is fatal, with progressive mental deterioration leading to coma and death. Damage caused in the neurological phase can be irreversible. Available treatments are toxic and require lengthy intravenous infusion and hospitalization. Trypanosomiasis also is a major source of serious illness in cattle and other livestock, which is estimated to cost the economies of sub-Saharan Africa about $4.5 billion annually from lost farm income and increased malnutrition.
About Chagas Disease. Chagas disease is caused by the parasite Trypanosoma cruzi, which is transmitted to animals and people by triatomine insects. It is estimated that as many as 8-11 million people in Mexico and Central and South America are infected. If untreated, infection is lifelong and can be life threatening. Cardiac complications can include an enlarged heart, heart failure, altered heart rate and cardiac arrest, and intestinal complications include an enlarged esophagus or colon. The average lifetime risk of Chagas-infected individuals developing these complications is about 30%. Anti-parasitic medications are usually only effective when given during the acute stage. They can be very toxic, and resistance has already been reported. In the chronic stage of Chagas disease, treatment is limited to managing the clinical manifestations. The scale of the problem is highlighted by the fact that chronic heart disease caused by Chagas is now a major reason for heart transplantation surgery in South America.
Notice Regarding Forward-Looking Statements: This news release contains “forward-looking statements”, as that term is defined in Section 27A of the United States Securities Act of 1933, as amended, and Section 21E of the United States Securities Exchange Act of 1934, as amended. Statements in this press release which are not purely historical are forward-looking statements and include any statements regarding beliefs, plans, expectations or intentions regarding the future. Such forward-looking statements include, among others, the expectation and/or claim, as applicable, that: (i) Pacific Pharma’s technologies may have potential applications against major tropical parasitic diseases; (ii) Pacific Pharma’s technologies may have substantial commercial potential and such technologies fit well with the Company’s core competencies in computational-based approaches to biomarker identification; (iii) the Company intends to begin screening compounds against malaria and to test compounds from related classes as potential therapies for tuberculosis; (iv) the Company intends to work with a variety of public and private organizations to ensure timely and cost-effective clinical development of drug candidates generated by its technologies; (v) the Company expects to pursue other therapeutic applications of the technology going forward; (vi) potential drug candidates may be produced following application of screening analysis and diversity generation chemistry; (vii) technology can be used to identify novel applications for existing drugs; (viii) technology may be effective for the rapid identification of drugs that can be used to fight antibiotic resistant super-bug pathogens or emerging new infectious agents; and (ix) the Company may advance new compounds into clinical development and explore other drug discovery applications of the technology platform. Actual results could differ from those projected in any forward-looking statements due to numerous factors. Such factors include, among others: (i) the risk that the Company does not execute its business plan; (ii) the inability of the Company to keep pace with technological advancements in the field of genetic diagnostics; (iii) the Company’s inability to adequately protect its intellectual property or the Company’s inadvertent infringement of third party intellectual property; (iv) the Company not being able to retain key employees; (v) competitors providing better or cheaper products and technologies; (vi) markets for the Company’s products not developing as expected; (vii) the Company’s inability to finance its operations or growth; (viii) inability to obtain all necessary government and regulatory approvals; and (ix) the inability to effectively market and commercialize the Company’s technologies, including the establishment of viable relationships with third parties. These forward-looking statements are made as of the date of this news release and the Company assumes no obligation to update the forward-looking statements, or to update the reasons why actual results could differ from those projected in the forward-looking statements. Although the Company believes that the beliefs, plans, expectations and intentions contained in this press release are reasonable, there can be no assurance those beliefs, plans, expectations, or intentions will prove to be accurate. Investors should consider all of the information set forth herein and should also refer to the risk factors disclosed in the Company’s periodic reports filed from time-to-time with the Securities and Exchange Commission and available at www.sec.gov.
Posted under Mergers and Acquisitions, North America, Press Releases | No Comments
Sigma-Aldrich Announces LentiExpress(TM) Technology for Faster and Easier High-Throughput RNAi Screening
Last Updated on Wednesday, 29 August 2007 01:09 Written by Fred Wednesday, 29 August 2007 01:09
Novel viral delivery method saves significant time and costs with a ready-to-go process for whole-kinome screens.
ST. LOUIS, Aug. 28 /PRNewswire-FirstCall/ — Sigma-Aldrich is pleased to introduce the LentiExpress shRNA-based system (http://www.sigma.com/lentiexpress) for rapid high-throughput RNAi screening with minimal reagent preparation or optimization required. The addition of this technology to the MISSION(R) shRNA platform pairs the benefits of lentiviral-based shRNA with a simple streamlined protocol.
The bottleneck for researchers is the time and expense required to generate viral particles and devise a robust screening strategy. With the MISSION LentiExpress technology, they can eliminate reagent preparation with a sophisticated yet simple method to perform complex screens. An Optimization Plate enables researchers to quickly optimize the system for their particular cell line. This optimization process is uniquely simple compared to cumbersome transfection optimization methods that exist for siRNA-based screens. A researcher simply adds the desired number of cells to each well, continues with optional selection and/or addition of small molecules (for example, pharmaceutical compounds), and then proceeds directly to the desired assay for gene silencing or loss-of-function.
The LentiExpress format with the Human Kinase shRNA collection of The RNAi Consortium (TRC) enables rapid human kinome RNAi screening. The MISSION LentiExpress Human Kinase shRNA set consists of 3,109 individual pre-arrayed lentiviral clones harboring shRNA sequences that target 673 human kinase genes for gene silencing.
“Because we created the product to be ready-to-go single-use assays, researchers now have access to a fast and affordable means to utilize RNAi in whole-kinome screens. Lentiviral-based shRNA is also known for the benefit of being able to deliver RNAi effector molecules to a wide variety of cells including primary and non-transfectable cells lines,” said Dr. Edward Weinstein, Manager of Functional Genomics Operations at Sigma-Aldrich. “Another benefit is stable long-term knockdown compared to transient transfection based siRNA options.”
“Sigma-Aldrich researchers have performed proof-of-principle LentiExpress screens examining which genes might play a role in the modulation of a well-known cancer chemotherapy drug,” said Dr. David Smoller, President of the Sigma-Aldrich Research Biotech business unit. “The screen resulted in hits already validated by the literature as well as additional hits that could be further investigated as prognostic markers for susceptibility to treatment. Both internal and external validations of the methodology have proven the utility of this exciting technology.”
The LentiExpress technology complements the already robust MISSION shRNA product line which includes libraries, gene family sets, and gene target sets for The RNAi Consortium lentiviral-based shRNA collection targeting the human and mouse genomes. The product portfolio includes a viral packaging system, a variety of controls, as well as the unique ability to offer any or all of the collection in a choice of glycerol stock, purified DNA or viral particle format. Sigma-Aldrich’s complete RNAi platform also includes the MISSION siRNA libraries, mRNA detection reagents, antibodies and AQUA peptides for protein level detection as well as an entire workflow of supporting reagents (cell culture, cell biology compounds and assays, transfection reagents, and much more). For more information, visit http://www.sigma.com/lentiexpress.
About Sigma-Aldrich: Sigma-Aldrich is a leading Life Science and High Technology company. Its biochemical and organic chemical products and kits are used in scientific and genomic research, biotechnology, pharmaceutical development, the diagnosis of disease and as key components in pharmaceutical and other high technology manufacturing. Sigma-Aldrich has customers in Life Science companies, university and government institutions, hospitals, and in industry. Over one million scientists and technologists use its products. Sigma-Aldrich operates in 36 countries and has 7,700 employees providing excellent service worldwide. Sigma-Aldrich is committed to Accelerating Customer Success through Leadership in Life Science, High Technology and Service. For more information about Sigma-Aldrich, please visit its award-winning Web site at http://www.sigma-aldrich.com.
About TRC: TRC is comprised of principal investigators from world-class academic research institutions (Massachusetts Institute of Technology, Harvard Medical School, the Broad Institute, Whitehead Institute for Biomedical Research, Dana-Farber Cancer Institute, Massachusetts General Hospital, Washington University, Columbia University, and Academia Sinica) as well as corporate sponsoring institutions (Sigma-Aldrich, Novartis, Eli Lilly, and Bristol-Myers Squibb). As a scientific collaborator and distribution partner through agreement with MIT, Sigma-Aldrich is working with TRC to provide the scientific community with RNAi tools for functional genomics research specifically for gene function discovery and the study of disease. The MISSION TRC shRNA clone libraries comprise a comprehensive collection of over 150,000 pre-cloned lentiviral-based shRNA vector constructs targeting more than 15,000 human genes (MISSION TRC-Hs1.0) and 15,000 mouse genes (MISSION TRC-Mm1.0). Design and development of the TRC libraries is being led by the Broad Institute of the Massachusetts Institute of Technology (MIT) and Harvard. For more information about MISSION shRNA clone collections, please visit us online at http://www.sigma.com/shrna.
Cautionary Statement: This release contains forward-looking statements relating to future performance, goals, strategic actions and initiatives and similar intentions and beliefs and other statements regarding the Companies’ expectations, goals, beliefs, intentions and the like, which involve assumptions regarding the Companies’ operations and conditions in the markets the Companies serve. The Companies do not undertake any obligation to update these forward-looking statements.
Posted under Discoveries, Innovations and Patents, North America, Press Releases | No Comments
Ambit Announces Update in Its Technology to Screen for Sources of Diseases
Last Updated on Wednesday, 22 August 2007 12:53 Written by Fred Wednesday, 22 August 2007 12:53
Nereus Pharmaceuticals Raises $45 Million in Private Placement
A Sorrento Valley company in the habit of selling screening services to big pharmaceutical concerns interested in seeing how various compounds react to select proteins has just announced a bigger, better screening technology.
Ambit Biosciences Chief Executive Officer Scott Salka said this month that its KinomeScan Profiling Technology can now scan for an additional 36 kinases, which are used to target a wide range of diseases, including cancer, as well as metabolic and neurological disorders and inflammation.
“At an ever-accelerating pace, scientists are establishing new links between kinases and disease,†Salka said in a prepared statement. “Our KinomeScan family of services helps our collaboration partners and customers see the full picture surrounding their kinase inhibitor development programs, ensuring that they select the best possible drug candidates to advance into human trials.â€
With the additional 36, the Kinome-Scan Profiling Technology now can scan for 353 kinases. Costs were not disclosed.
Ambit Biosciences is a privately held company that, in addition to its screening services related to kinases, focuses on the development of drugs for the treatment of cancer.
Ambit, which made a reported $4.7 million in 2005, was No. 3 on the San Diego Business Journal’s 2006 list of the fastest-growing private companies, with an 817 percent growth rate since 2003.
Published reports since have suggested that the company’s annual revenue may be more than $9 million. Ambit employs 70 people.
Money Watch: Sorrento Valley-based Nereus Pharmaceuticals Inc. has raised $45 million from the private placement of special preferred stock.
Nereus, which uses marine microbial in the discovery and development of cancer therapeutics, made the announcement Aug. 9.
The local company also named two new members to its board of directors. They are Jesper Zeuthen, lead investor of BankInvest Biomedical Venture of Copenhagen, Denmark, and Erich Platzer, an investment advisor with HBM Partners.
The money raised will be used to complete Phase I and begin Phase II clinical trials for Nereus’ two drug candidates: NPI-2358 for the treatment of solid tumors and lymphomas and NPI-0052 for multiple myeloma, lymphomas and solid tumors.
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BioServe and Phenomenome Discoveries Develop Novel Diagnostic Test for Colorectal Cancer
Last Updated on Monday, 13 August 2007 01:09 Written by Fred Monday, 13 August 2007 01:08
Laurel, MD and Saskatoon, SK, Canada, August 6, 2007 – BioServe and Phenomenome Discoveries Inc. (“PDIâ€) today announced that they have developed a novel serum-based diagnostic test for the identification of colorectal cancer (CRC), and pre-cancerous states conducive to the development of CRC. Colorectal cancer comprises a tenth of the global cancer burden, and is the third most common malignancy in the world. According to the National Cancer Institute, in the United States during 2007 there were an estimated 153,760 new cases of colorectal cancer and 52,180 deaths from the disease.
The new colorectal cancer diagnostic test is currently available in Canada and Japan. Both companies anticipate that the test will be available for distribution in the United States in Q4 2007. The test is also currently available for use by researchers worldwide as a fee-for-service research tool that allows research-use-only applications. Further plans for broad commercialization to physicians and patients are underway.
In developing the test, BioServe identified a large number of patient tissue and serum samples from its Global Repository® exhibiting CRC across a spectrum of stages, as well as matched healthy controls. Using PDI’s patented non-targeted metabolomics platform, PDI discovered that a series of novel metabolites were significantly decreased in serum samples collected from colorectal cancer patients compared to controls. From these results, PDI developed a two minute high-throughput screening method capable of simultaneously measuring a key subset of these molecules. BioServe provided a second independent population of 189 CRC samples and 287 controls, and the rapid test was found to be 78% sensitive and 90% specific in this validation sample set.
The test has now been validated in four independent studies, across which the sensitivity of detection for colorectal cancer positive cases averaged 75%, and the specificity averaged 90%. Trials are planned for late 2007 in Canada and Japan, in which healthcare authorities will evaluate the test’s utility as part of a broad-based population screening regimen.
“Early detection is the single most important factor in improving patient survival. The availability of a simple, serum-based, pre-colonoscopy screening test for CRC will have a positive impact on the low compliance rate of colonoscopy as a screening tool and enable healthcare providers to make more efficient use of the colonoscopy in the management of CRC,†said John Hyshka, Chief Operating Officer of PDI. “BioServe’s clinical colorectal cancer data and control samples from its vast Global Repository of over 600,000 human DNA, tissue and serum samples were critical to accelerating our research in colon cancer and developing this breakthrough diagnostic test. Based on our success in CRC, we have expanded our collaboration with BioServe to identify serum biomarkers for other forms of cancer as well as multiple sclerosis.â€
“The development of this new and novel diagnostic test for colorectal cancer showcases how BioServe successfully collaborates with partners to gain insights to disease at the deep molecular level to advance the science of personalized and predictive medicine,†said Kevin Krenitsky, Chief Executive Officer, BioServe. “PDI is at the forefront of molecular biomarker research and discovery, and we look forward to the discovery of similar biomarkers in other diseases as a result of our expanded collaboration with PDI and to the development of more ‘wellness’ enhancing diagnostics.â€
Posted under Cancer Research, Collaborations, Press Releases | No Comments
Spellex releases Spellex Biotech v.2007, the newest upgrade of the world’s first Bioscience spell checking software.
Last Updated on Monday, 13 August 2007 01:06 Written by Fred Monday, 13 August 2007 01:06
TAMPA, FL — Spellex Corporation announces the new release of the 2007 version of their popular bioscience spelling software for Microsoft and other programs. The new release includes more than 200,000 specialty words from the bioscience industry and new spelling engine enhancements.
Benefits:  The Spellex Biotech spelling dictionary allows users to save time and increase their accuracy. By adding Spellex Biotech to your Microsoft or WordPerfect program, your spell checker will provide correct spelling choices for incorrectly spelled bioscience terminology. The spell checker also allows users to look up unsure spelling of bioscience words by phonetic or typographical search without leaving their document. The regular Microsoft or WordPerfect spelling dictionary and the Spellex dictionary are spell checked simultaneously with one mouse click.
Spellex Corporation has added more than 20 Customer-Driven enhancements to their Spellex Biotech 2007 spell check program, including upgrades and updates to the biotech dictionary, spelling engine, registration program, and installation program.
Features:  Spellex Biotech is a comprehensive spelling dictionary reference that adds more than 200,000 bioscience terms to the user’s spell checker for specialties ranging from Agronomy to Zygote research. Spellex Biotech covers more than 70 different bioscience fields including agronomy, biochemistry, bioinformatics, biomedical engineering, biophysics, ecology, molecular and genetic biology, microbiology, organic chemistry, taxonomy, toxicology, and pharmacology, to name only a few.  Spellex Biotech includes thousands of abbreviations and acronyms encompassing scientific product names and devices, as well as medically and biotechnologically relevant organisms.
Users can also correctly spell newly introduced bioscience terminology by subscribing to the Spell-X-BioPlusTM software subscription service. This quarterly software subscription service updates the Spellex dictionaries with new biotechnology terms, new pharmaceutical terms, and more.Â
Spellex dictionaries are compatible with Microsoft, most Windows programs, developer tools, custom applications, Web browsers, and are available in US English or UK English.
To request product information or to place an order, contact Spellex Corporation at 800-442-WORD (9673) or 813-792-7000. You can also visit www.spellex.com/products/biotech.htm.
Posted under ChemInformatics, Press Releases | No Comments
Thermo Fisher Scientific Extends its GC/MS Product Portfolio with Introduction of Highly Sensitive and Versatile GC Triple Quadrupole Mass Spectrometer
Last Updated on Wednesday, 9 April 2008 01:06 Written by Fred Thursday, 9 August 2007 12:27
Chromatography and Mass Spectrometry
Thermo Fisher Scientific Inc., the world leader in serving science, announces the launch of the ultra-sensitive TSQ Quantum(TM) GC gas chromatograph triple quadrupole mass spectrometer. Developed for use in environmental, food, toxicology, pharmaceutical and clinical research laboratories, the system allows industry leading levels of sensitivity, selectivity and simultaneous quantification and structural confirmation through its innovative scan function, Quantitation-Enhanced Data-Dependent MS/MS (QED-MS/MS), at the lowest limits of quantitation. The system offers the ability to switch between GC and LC modes, offering an extremely flexible system. This system will be displayed at the downtown Marriott Ballroom 5, June 3-7, 2007 from 7:00-10:00 PM during the 55th Annual ASMS Conference on Mass Spectrometry in Indianapolis, Indiana.
The Thermo Scientific TSQ Quantum GC is the most sensitive and versatile GC triple quadrupole mass spectrometer instrument available on the market. The GC-MS/MS extends the TSQ Quantum portfolio, achieving higher sensitivity and lower detection limits making it ideally suited for regulated environments. The TSQ Quantum GC delivers high sensitivity with Highly Selective Reaction Monitoring (H-SRM) and lowest limits of quantitation. The H-SRM capability allows the quantitation of hundreds of compounds in a single run for multi-residue screening, while the zero cross-talk collision cell helps in the elimination of false positives.
The system consists of a TSQ Quantum triple quadrupole mass spectrometer, TRACE GC Ultra(TM) and TriPlus autosampler, and is configured with Thermo Scientific Xcalibur(TM) software. Xcalibur is the most powerful and robust data system available, delivering a unique combination of functionality, system control and ease of use. It also contains a built-in audit trail to ensure compliance with laboratory SOPs and quality programs.
In addition, the TSQ Quantum GC includes application-specific software such as Thermo Scientific LCQUAN software, designed to offer scientists workflow-oriented approaches to GC-MS/MS analyses.
The TSQ Quantum GC completes the company’s GC/MS product line by offering a new level of selectivity and performance between the PolarisQ(TM) ion trap GC/MS and the DFS High Resolution Magnetic sector GC/MS.
For more information on the Thermo Scientific TSQ Quantum GC, please call 1-800-532-4752, e-mail analyze@thermofisher.com or visit www.thermo.com/ms.
Thermo Scientific is part of Thermo Fisher Scientific, the world leader in serving science.
About Thermo Fisher Scientific
Thermo Fisher Scientific Inc. (NYSE: TMO) is the world leader in serving science, enabling our customers to make the world healthier, cleaner and safer. With an annual revenue rate of more than $9 billion, we employ 30,000 people and serve over 350,000 customers within pharmaceutical and biotech companies, hospitals and clinical diagnostic labs, universities, research institutions and government agencies, as well as environmental and industrial process control settings. Serving customers through two premier brands, Thermo Scientific and Fisher Scientific, we help solve analytical challenges from routine testing to complex research and discovery. Thermo Scientific offers customers a complete range of high-end analytical instruments as well as laboratory equipment, software, services, consumables and reagents to enable integrated laboratory workflow solutions. Fisher Scientific provides a complete portfolio of laboratory equipment, chemicals, supplies and services used in healthcare, scientific research, safety and education. Together, we offer the most convenient purchasing options to customers and continuously advance our technologies to accelerate the pace of scientific discovery, enhance value for customers and fuel growth for shareholders and employees alike. Visit www.thermofisher.com.
Toward Faster Tests To Identify Carcinogens And Other Environmental Toxins
Last Updated on Thursday, 9 August 2007 12:25 Written by Fred Thursday, 9 August 2007 12:25
Science Daily — After years of frustration with traditional methods for testing the toxicity of chemicals in the environment, scientists are working to adapt faster, simpler screening methods that do not require animals, now used by the pharmaceutical industry to identify potential drug candidates, according to an article scheduled for the August 6 issue of Chemical & Engineering News (C&EN).
The article, written by C&EN Senior Editor Celia Henry Arnaud, explains that animal testing long has been the gold standard for environmental toxicology. But such tests take years to complete, can’t always be confidently extrapolated to humans, and require the use of laboratory animals. As a result, only a handful of commercial chemicals have gone through the complete battery of tests used by the Federal Government’s National Toxicology Program in its most thorough toxicology investigations.
Arnaud explains how environmental toxicologists are eyeing an attractive alternative — the so-called high-throughput screening methods that pharmaceutical companies use to find potential drug candidates within libraries of compounds. “If successful, such assays may in the short term reduce the animal toxicity tests that are necessary and in the long term replace animal tests entirely,” the article states. It points out, however, that formidable challenges lie ahead in adapting those tests for accurately predicting which commercial chemicals are potential human health threats.
Article: “Toward Toxicity Testing Without Animals: High-throughput methods from pharma could reduce need for animals when assessing toxicity of chemicals in the environment”
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Caliper Life Sciences Introduces EZ Reader Series for In-house Kinase Profiling
Last Updated on Wednesday, 8 August 2007 11:58 Written by Fred Wednesday, 8 August 2007 11:58
HOPKINTON, Mass., Aug. 7 /PRNewswire-FirstCall/ — Caliper Life Sciences, Inc. today launched the Caliper LabChip(R) EZ Reader(TM) Series, delivering a complete range of products for in-house kinase profiling. The series, which complements the existing LabChip 3000 system, Caliper’s most sophisticated system for drug discovery, includes the new EZ Reader II system, a bench-top reader to use for real-time kinetic analysis with push-button operation, and the EZ Reader system, formerly the DeskTop Profiler(TM) system. Each product in the EZ Reader Series utilizes Caliper’s LabChip microfluidic-based screening technology to yield high-quality, reproducible data to help pharmaceutical researchers more confidently qualify potential lead candidates.
The EZ Reader Series features innovative systems that rapidly profile compounds against a diverse kinase panel in a timely and cost-effective manner. The Series complements Caliper’s existing offerings for kinase profiling. The EZ Reader system features a four-sipper Caliper LabChip microfluidic device, while the EZ Reader II system provides a choice of either a 4-sipper or a 12-sipper LabChip device to run assays with up to three times higher throughput. The EZ Reader II system also enables real time kinetic analysis, allowing researchers to study enzyme behavior over time in mechanism-of-action (MOA) studies. Its compact, bench-top size and push-button operation delivers a high level of functionality without a large footprint or the need for highly skilled operators. Caliper’s ProfilerPro(TM) kinase reagent profiling kit, which allows broad range, rapid kinase profiling in-house, accompanies each system.
“The EZ Reader II system extends the benefits of Caliper’s LabChip technology to academic laboratories, small biotech companies and distributed therapeutic groups,” said Rick Bunch, Business Unit Manager, LabChip Systems, Caliper Life Sciences. “Its inclusion in the EZ Reader series demonstrates Caliper’s commitment to delivering technology and services that fulfill a broad range of customer needs.”
The EZ Reader II system is currently on display at the Drug Discovery & Development of Innovative Therapeutics (DDT) conference in Boston. For additional information, please visit Caliper Life Sciences at booth 628.
About Caliper Life Sciences
Caliper Life Sciences is a leading provider of cutting-edge technologies enabling researchers in the life sciences to create life-saving and enhancing medicines and diagnostic tests more quickly and efficiently. Caliper is aggressively innovating new technology to bridge the gap between in vitro assays and in vivo results and then translate those results into cures for human disease. Caliper’s portfolio of offerings includes state-of-the-art microfluidics, lab automation & liquid handling, optical imaging technologies, and discovery & development outsourcing solutions. For more information please visit http://www.caliperLS.com.
Caliper, LabChip, DeskTop Profiler, ProfilerPro and EZ Reader are trademarks of Caliper Life Sciences, Inc.
Posted under North America, Press Releases, Targeted Libraries | No Comments
Michigan High Throughput Screening Center and NSF International Announce New Partnership
Last Updated on Wednesday, 1 August 2007 12:13 Written by Fred Wednesday, 1 August 2007 12:13
ANN ARBOR, MI and KALAMAZOO, MI, July 31, 2007– Global Lifescience Solutions, an NSF International Company offering contract research services to the biotechnology and pharmaceutical industries, today announced a new partnership with the Michigan High Throughput Screening Center (MHTSC).
MHTSC is a not-for-profit, contract research laboratory that provides assay development and state-of-the-art high throughput screening (HTS) services without licensing fees or royalties. Through the new partnership, pharmaceutical companies and biotechnology companies can now take advantage of HTS screening offered by MHTSC and high content screening offered by GLS – capabilities that are critical in drug development and research.
“As more and more drug companies outsource their research and testing, our goal is to provide solutions that will expedite the drug development process,†said Aline Lindbeck, Ph.D., general manager, Global Lifescience Solutions. “Our life-science organizations and state-of-the-art laboratories will position the State of Michigan as a leader in scientific research and high-tech screening services.â€
Together, GLS and MHTSC will assist companies in identifying potential leads for drug discovery. GLS’ high content screening services provide preliminary toxicity data on drug candidates as well as additional information on the mechanisms by which drug candidates may elicit their cellular response.
Companies that will benefit from the new collaboration include public research institutions, government institutions, and biotechnology and pharmaceutical companies that conduct drug discovery work, as well as companies who do not have in-house high content or high throughput screening capabilities.
“Our mission at MHTSC is to provide access to state of the art screening technology and expertise,†said Rob Kilkuskie, Ph.D., senior director, Michigan High Throughput Screening Center. “Our collaboration with GLS allows us to expand the characterization of the compounds coming out of our screens. We believe this will greatly facilitate our clients’ drug discovery research.â€
New service offerings under the partnership include:
Prescreening services – help companies cost effectively determine which targets should be fully screened Assay development – assay design and optimization Follow-up services – assist companies with follow-up screening and lead optimization High content screening – help companies examine multiple cellular targets and parameters in a large number of individually imaged cells and quantitatively assess the data
“The collaboration between GLS and MHTSC leverages the expertise and technology at each institution, and provides our clients an expanded array of screening services,†said Kathy Johnson, director of business development, MHTSC.
For more information on this partnership and new service offerings, please contact James Wallin, GLS at jwallin@nsf.org or 734-827-5630, or Kathy Johnson, MHTSC at kjohnson@kvcc.edu or 269-353-1560.
About Michigan High Throughput Screening Center: Michigan High Throughput Screening Center (MHTSC) at Kalamazoo Valley Community College is a not-for-profit company that provides state-of-the-art High Throughput Screening (HTS) technology to public research institutions, biotechnology companies, and large pharmaceutical corporations (http://mhtsc.kvcc.edu). MHTSC identifies potential leads for drug discovery and develops chemical research tools to explore biochemical and metabolic pathways. MHTSC is a contract research laboratory, working on a fee for service basis. MHTSC is a member of the Michigan Core Technology Alliance (www.ctaalliance.org), a consortium of research laboratories with the goal of developing technologically sophisticated core facilities to enhance life sciences research and product development throughout the State of Michigan.
About Global Lifescience Solutions™, LLC: Global Lifescience Solutions™, LLC, an NSF International Company, is a contract research organization (CRO) that offers integrated technical services for companies focused on product innovations in the fields of pharmaceuticals, biotechnology, dietary supplements, food and nanotechnology (www.nsf-gls.com). With clients ranging from innovative start-up companies to Fortune 100 and multi-national corporations, GLS provides comprehensive research services that address client needs for basic research, proof of concept, product regulatory registration, and field trials and validation.
Posted under Mergers and Acquisitions, North America, Press Releases | No Comments
Device that may help find cure for Lou Gehrig’s disease developed
Last Updated on Wednesday, 1 August 2007 12:07 Written by Fred Wednesday, 1 August 2007 12:07
Washington, July 31: Researchers have developed a device that may boost the findings of a cure for fatal neurodegenerative condition Lou Gehrig’s disease.
Lou Gehrig’s disease-or ALS or amyotrophic lateral sclerosis is a fatal neurodegenerative condition that affects nerve cells in the brain and the spinal cord.
The study was conducted by a team of researchers led by Glenn S. Gerhard at Bucknell University.
Earlier the researchers used zebrafish, which can be easily bred and tends to exhibit disease’s effects at an accelerated rate to find new drugs to fight the disease.
Researchers believed that the cure or at least a more viable treatment option for the disease could be found in the right mix of the millions of drugs and drug compounds that have been developed in laboratories across the world.
“There are so many different compounds but you don’t know which ones to test. We need bioengineering help to automate this process,” Gerhard said.
As part of the study researchers developed a working prototype screening plate that allows scientists to quickly expose zebrafish to ALS and mix chemicals together.
The device might test the potential cure-carrying chemical solutions in few days as compared to months needed earlier and with far fewer research staff involved.
Researchers noted that a streamlined screening process might also free up precious resources in the lab.
Posted under Discoveries, Innovations and Patents, North America, Press Releases | No Comments
Sigma-Aldrich Adds More Than 56,000 Structures to PubChem to Aid Research
Last Updated on Wednesday, 1 August 2007 12:05 Written by Fred Wednesday, 1 August 2007 12:05
A publicly accessible database of chemical structures and biological assay data. In conjunction with this, PubChem IDs have been incorporated into product listings on the Sigma-Aldrich Web site, providing customers a link between a molecule on the Sigma-Aldrich Web site and the corresponding PubChem data. “With the latest addition of structures to PubChem, Sigma-Aldrich is reinforcing its commitment to addressing the needs of researchers working to understand and chemically modulate the activities of gene products associated with disease,” said Christina Shasserre, Vice President of Marketing and Business Development for Sigma-Aldrich’s Research Biotechnology division. “By expanding our PubChem submissions to include a large, diverse selection of biologically relevant compounds, we aim to provide researchers better access to molecules that may aid follow-up research.”
Dr. Stephen Bryant, Project Director, PubChem, added: “Speaking for the PubChem team, I’m very happy to welcome Sigma-Aldrich’s second contribution of structures to PubChem. Links to suppliers of specialty chemicals are of great value to PubChem users, who often ask how they can obtain samples of compounds tested in the screens reported in PubChem. These new links will be much appreciated.”
These structures are derived from thousands of bioactive small molecules and biologically relevant scaffolds for use in small molecule screening and medicinal chemistry. This addition represents the second contribution by Sigma-Aldrich to PubChem. Structures representing the widely used Library of Pharmacologically Active Compounds (LOPAC(TM)), a collection of approved drugs and bioactive small molecules, were added in April 2007.
About Sigma-Aldrich: Sigma-Aldrich is a leading Life Science and High Technology company. Its biochemical and organic chemical products and kits are used in scientific and genomic research, biotechnology, pharmaceutical development, the diagnosis of disease and as key components in pharmaceutical and other high technology manufacturing. The Company has customers in life science companies, university and government institutions, hospitals, and in industry. Over one million scientists and technologists use its products. Sigma-Aldrich operates in 36 countries and has 7,700 employees providing excellent service worldwide. Sigma-Aldrich is committed to Accelerating Customer Success through Leadership in Life Science, High Technology and Service. For more information about Sigma-Aldrich, please visit its award-winning Web site at sigma-aldrich.com.
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Hydra Lands Potential $195M Deal With Pfizer On Pain Drugs
Last Updated on Wednesday, 1 August 2007 11:56 Written by Fred Wednesday, 1 August 2007 11:56
Hydra Biosciences Inc. licensed rights to its TRPV3 antagonist program to Pfizer Inc. in a deal valued at up to $195 million.
The work centers around the relatively new area of transient receptor potential, or TRP, channels, which is distinct from traditional voltage gated ion channels. A number of companies have development programs targeting one of the channels, the TRPV1, or vanilloid 1, receptor for pain indications.
Hydra, of Cambridge, Mass., has a preclinical program targeting TRPV3, also a vanilloid receptor and also being studied initially for pain indications.
There are 28 members of the superfamily of TRPs, and Hydra is working on four or five of them, said Russell Herndon, the company’s president and CEO.
“This is a new, rich area of opportunity for research,” Herndon told BioWorld Today. “Not only are they new, but they are different from voltage-gated channels because they lack homology.”
Hydra said TRPs are believed to represent about 10 percent of all ion channels, and act as multimodal signal integrators. The idea is that compounds targeting those channels would have greater potency and selectivity, resulting in fewer side effects.
Pfizer, of New York, gained exclusive worldwide rights to all TRPV3-related compounds coming from the collaboration. In exchange, it will make an undisclosed up-front payment to Hydra and potential development milestones payments that together could total $195 million for the first product. The deal also contemplates upside potential to Hydra based on additional indications or products. Pfizer also will cover all research and development expenses, and would pay Hydra royalties on any resulting sales. More-specific information on the financial aspects of the deal was not disclosed.
Herndon said the lead compound from the TRPV3 program is in the lead-optimization stage. Prior to the partnership, its plan was to name a development candidate in 2008 and to initiate Phase I trials in 2009. “We view this as sort of a validating deal for this novel area of TRP research,” Herndon said. “For an early development program, $195 million in the preclinical space is a significant deal.”
Herndon said work at Hydra has led to the belief that TRPV3 is associated with various pain states, with antagonists of the target expected to block the channel and prevent the painful episodes. He said there could be applicability in surgical pain, chronic pain, pain from osteoarthritis and rheumatoid arthritis, and neuropathic pain. “We’ve seen strong preclinical activity in many different animal models for the treatment of pain,” he said. “We’re seeing efficacy similar to that of morphine and strong NSAIDs, without being narcotic.”
Herndon said a Hydra program just behind TRPV3 also focuses on pain, through a different target. Other programs at Hydra involve developing agonists and antagonists of ion channels for treating inflammation, cardiovascular diseases, renal diseases and pulmonary diseases and others.
“We’re probably the only company focused on these classes of channels,” Herndon said. “As we grow the company, partnerships will be an important aspect. I’m not saying we would be looking to partner all of our programs as early as this one. This was a great opportunity with a world-class pharmaceutical company that’s a leader in the area. So it made sense at this time.”
Hydra was incorporated in 2001 and has raised about $29 million in its Series A and B rounds, in 2002 and 2004, respectively. The company is working on bringing in additional funds through a Series C round, Herndon said.
The focus at Hydra currently is almost exclusively on ion channels. It previously had programs in vascular therapeutics and regenerative medicines, with the lead from the latter program in cardiac regeneration.
In a news release, Herndon said: “Hydra’s growing franchise opportunities in ion channel agonists and antagonists are competitively differentiated. We have distinct capabilities in rapid ion channel assay development and high-throughput screening, we employ the ‘gold standard’ in characterizing all viable compounds, and we are building a particular expertise in chemistry.”
Posted under Business and Investment, North America, Press Releases | No Comments
Hydra Biosciences and Pfizer Global Research & Development Sign Collaboration Agreement
Last Updated on Wednesday, 1 August 2007 11:53 Written by Fred Wednesday, 1 August 2007 11:53
CAMBRIDGE, Mass.–(BUSINESS WIRE)–Hydra Biosciences announced today that it has signed a collaboration agreement with Pfizer Global Research & Development. The collaboration will be focused on TRPV3 antagonist product candidates for pain.
The Transient Receptor Potential (TRP) channel family comprises a novel group of non-selective cation channels that are distinct from classical voltage gated ion channels. Recent work indicates that TRPs respond to a variety of stimuli and second messenger signaling. As such, it is believed that TRPs act as multimodal signal integrators. This gene family represents ~10% of all ion channels. Since TRP channels are only distantly related to voltage gated channels and homology among TRP family members is quite low, it is anticipated that specific and selective modulators may be more readily identified in this family than in other ion channel families, limiting the potential for off-target effects, which have plagued other ion channel families.
Under the terms of the agreement, Hydra will receive upfront and success-based development milestone payments totaling $195 million for the first developed product launched, with upside potential for additional approved indications. Furthermore, there are opportunities afforded under this agreement for the development of additional products. Pfizer will fund all research and development under the agreement and will receive exclusive access to Hydra’s current TRPV3 patents as well as an exclusive license to commercialize any compound from the collaboration. Once the products are on the market, Pfizer will pay worldwide royalties to Hydra.
“Hydra’s growing franchise opportunities in ion channel agonists and antagonists are competitively differentiated. We have distinct capabilities in rapid ion channel assay development and high throughput screening, we employ the ‘gold standard’ in characterizing all viable compounds, and we are building a particular expertise in chemistry. Driving this franchise is a deep pipeline of programs advancing through development in a variety of pain indications, renal disease, pulmonary dysfunction, and hypertension. Today’s collaboration with Pfizer, a leader in the pain field, represents an important validating step for this novel approach for the treatment of pain and for our core ion channel technology. In addition, we are looking forward to pursuing a number of opportunities for our non-TRPV3 ion channel agonists and antagonists,†stated Russell Herndon, President and CEO, Hydra Biosciences.
Posted under Collaborations, News by Subject, North America, Press Releases | No Comments
Colorectal cancer research surges at Vanderbilt-Ingram Cancer Center
Last Updated on Wednesday, 1 August 2007 11:44 Written by Fred Wednesday, 1 August 2007 11:44
The Vanderbilt-Ingram Cancer Center has landed another round of support for its Specialized Program of Research Excellence (SPORE) in gastrointestinal cancer, one of only five such programs in the country. The National Cancer Institute will provide $11.8 million over the next five years to forward Vanderbilt-Ingram’s innovative colorectal cancer research.
“We received the top score in the country in the latest pool of GI SPORE applications,” said Robert J. Coffey Jr., M.D., Ingram Professor of Cancer Research, Wallace Professor of Medicine, and director of the GI SPORE. “This reflects that we have one of the premier GI cancer programs in the country here at Vanderbilt.”
The NCI established organ-specific SPOREs in 1992 to promote interdisciplinary research with a “translational” emphasis — work that spans the gap from basic science discovery to clinical application. SPOREs bring together basic, clinical and population-based scientists to collaborate on research with clear potential to improve patient care. GI SPOREs are located at Vanderbilt, Johns Hopkins University, Harvard University, the University of Arizona and the University of North Carolina at Chapel Hill.
Vanderbilt-Ingram has two additional SPOREs, one in breast cancer and one in lung cancer. It is one of only seven centers to hold three or more SPORE grants.
Vanderbilt’s GI SPORE, co-directed by Mace Rothenberg, M.D., focuses on colorectal cancer, the second leading cancer killer in the United States. There will be nearly 150,000 new cases of colorectal cancer diagnosed this year and more than 55,000 deaths, according to American Cancer Society estimates. And because the risk of developing colorectal cancer grows with age, the impact of this cancer is expected to increase as the U.S. population ages.
Coffey attributes Vanderbilt’s success in colorectal cancer research to a “very strong three-pronged approach.” One prong, the Epithelial Biology Program, focuses on polarized colorectal cancer cells in vitro — how they compartmentalize important signaling molecules like the epidermal growth factor (EGF) receptor and some of its ligands.
Insights from cells are advanced to mouse models in the second prong — Vanderbilt is a member of the NCI’s Mouse Models of Human Cancers Consortium (MMHCC) — and to human beings studied as part of the GI SPORE in the third prong. Coffey is the only person in the country to direct both an MMHCC and a SPORE grant.
“We have created a robust platform to propel forward innovative diagnostic and therapeutic approaches to colorectal cancer,” Coffey said.
In the GI SPORE’s first five-year cycle, Vanderbilt investigators made significant progress, Coffey noted. They implicated altered regulation of p120 — a protein first identified at Vanderbilt — in the pathogenesis of colorectal cancer, conducted a biomarker-based cooperative group trial of Iressa in the treatment of advanced colorectal cancer, and initiated a large population-based study examining predictors of adenoma (colon polyp) recurrence.
The renewal application for the GI SPORE includes continuing projects from the first cycle and a new high-throughput screening strategy that aims to develop drug candidates for treating colorectal cancer.
“We knew that the competition was going to be intense, so we decided to ‘roll the dice’ and propose high-risk, high-payoff projects,” Coffey said. “We are the first SPORE to propose high-throughput screening.”
The investigators are using the Vanderbilt Institute of Chemical Biology’s high-throughput screening facility under the direction of C. David Weaver, Ph.D., to screen libraries of synthetic small molecules and natural products. R. Daniel Beauchamp, M.D., is leading a screen for compounds that restore E-cadherin to the cell surface of colorectal cells and could therefore reverse the epithelial-to-mesenchymal transition that is a central event in the development of metastasis. Ethan Lee, M.D., Ph.D., is directing a screen to identify agents that block Wnt signaling, a pathway that becomes deranged in nearly 90 percent of colorectal cancers.
“We already have a number of exciting hits from these screens,” Coffey said. One of the “hits” is an FDA-approved drug that “has the potential to advance rapidly to a clinical trial.”
A new feature of Vanderbilt’s GI SPORE renewal application was the inclusion of patient advocates as integral members of each project.
“We’re very proud that we have a strong group of patient advocates who are an integral part of our SPORE program,” Coffey said. “They are always reminding us…how is this going to impact patients with colorectal cancer, either in terms of prevention, diagnosis or treatment. That’s a good reality test.
“I think we’re uniquely poised to make significant advances in these areas over the next five years.”
GI SPORE projects and their leaders:
- Project 1 will implement optimum clinical blockade of the EGF receptor axis and Src inhibition. (Coffey, Rothenberg and Jordan Berlin, M.D.)
- Project 2 is the high-throughput screening directed against the targets E-cadherin and axin. (Beauchamp and Lee)
- Project 3 will pursue the role of p120 in the pathogenesis of colorectal cancer. This continuing project builds on major findings during the first SPORE funding cycle about p120′s role in regulating E-cadherin and in early steps in the development of colorectal cancer. (Albert Reynolds, Ph.D., and Mary Kay Washington, M.D., Ph.D.)
- Project 4 continues the Tennessee Colorectal Polyp Study, an effort to identify predictors for adenoma incidence and recurrence. Molecular and lifestyle predictors will aid colorectal cancer prevention efforts. This project dovetails with the Jim Ayers Institute for Precancer Detection and Diagnosis at Vanderbilt, which aims to identify a serum marker for colorectal cancer. (Reid Ness, M.D., M.P.H., and Wei Zheng, M.D., Ph.D., M.P.H.)
The SPORE is supported by a number of “tremendous cores,” Coffey said. These cores and their leaders are Administrative, Coffey, Rothenberg and Ann Greene; Tissue, Washington; Clinical Trials, Rothenberg; Biostatistics, Yu Shyr, Ph.D., and Bonnie LaFleur, Ph.D., M.P.H.; and High-Throughput Screening, Weaver, Michelle Lewis, Ph.D., and Emily Days.
“I can’t emphasize enough how much of a team effort this was,” Coffey said. “This renewal represents the tireless efforts of people like Jeffrey Franklin, Bonnie LaFleur and H. Charles Manning, who are really the unsung heroes of this process. They are three examples of the willingness of people to pull together and work toward a common goal, which is, I think, one of the real strengths of Vanderbilt.”
Posted under Cancer Research, North America, Press Releases | No Comments
Unigen Pharmaceuticals reaps the rewards of a software product that enables CASE, better data management, and reporting
Last Updated on Wednesday, 1 August 2007 11:40 Written by Fred Wednesday, 1 August 2007 11:40
Toronto, Canada (July 26, 2007) – Leading natural product research and development company and proprietary ingredients supplier, Unigen Pharmaceuticals, found a solution to the challenges of managing multiple analytical techniques and data formats to effectively carry out structure elucidation for lead compounds. Implementing an innovative software product, ACD/Structure Elucidator, eases the burden of structure elucidation with computer assisted structure elucidation (CASE) and provides a platform to process, analyze, and store all analytical data in one place.
Structure elucidation is a critical task in natural product research. It usually involves the use of many different analytical techniques ranging from NMR, mass spectrometry, IR, and chromatography. Various vendor formats further complicate the issue, rendering it difficult to collect and store all of this data, and even more difficult to interpret the data in order to elucidate a compound’s structure.
What Unigen needed was a product that could combine the NMR spectroscopist’s expert knowledge with data from other analytical techniques, integrating, predicting, processing, and databasing the available information. ACD/Structure Elucidator from Advanced Chemistry Development, Inc., (ACD/Labs) includes processing and databasing tools for 1D and 2D NMR, MS, UV-IR, and Chromatography. Once all of this information has been coherently brought together, ACD/Structure Elucidator, using its industry leading CASE capabilities, helps determine the structure of unknown compounds.
To work with ACD/Labs, using their state-of-art structure elucidation software, is one of the key technology initiatives at Unigen in 2007. ACD/Structure Elucidator has significantly enhanced the structure elucidation competency in the novel natural ingredient discovery process through the screening of tens of thousands of medicinal plants in the PhytoLogixTM library at UNIGEN® USA.
“At present, Unigen has five on-going discovery screening projects with each project yielding hundreds of purified natural compounds after bioassay guided isolation. How to improve our accuracy and efficiency in structure identification is a huge technology challenge to our chemists,” commented Dr. Qi Jia, Chief Scientific Officer at Unigen. “ACD/Labs software, the database and the experience of the company in natural products offer a perfect solution to our needs.”
The ability to create a comprehensive database opens up the opportunity for a company to build a library of experimental data that can serve as a valuable resource for compound identification in the future. In addition, ACD/Structure Elucidator includes ACD/Labs’ 1H, 13C, and 2D NMR prediction packages which can also be used independently for other challenging NMR projects.
Dr. Jia forecasts that the extensive use of ACD/Structure Elucidator will help Unigen to bring more novel natural products into its discovery and development pipeline. The success of the collaboration with ACD/Labs has led to a decision from Unigen?s board to bring in new NMR equipment to its Lacey, WA, facility in the third quarter of this year.
Posted under ChemInformatics, North America, Press Releases | No Comments
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