Bio Screening Industry News

Archive for December, 2007

December 20, 2007

CLC bio provides bioinformatics educational solutions to Andhra University and 25 affiliated colleges

Filed under: Asia, Press Releases, BioInformatics — admin @ 2:42 pm

Visakhpatnam, Andhra Pradesh, India – December 20, 2007 — CLC bio today announced the signing of a Memorandum of Understanding at an official ceremony at Andhra University, one of the most prestigious universities in India.

Under the agreement, Andhra University and 25 affiliated post graduate colleges will implement CLC bio’s educational solutions as an integrated part of their curriculum. CLC bio provides their top-line sequence analysis software, CLC Combined Workbench, to the university and colleges as well as training of the teachers and provision of customized education materials like PowerPoint slides, exercises, and more.

At the signing ceremony, Professor L. Venu Gopal Reddy, Vice Chancellor of Andhra University stated,
‘Its our great pleasure to announce this collaboration with CLC bio India. We are very happy to state that from now on Andhra University will be a dedicated user of CLC bio’s bioinformatics solutions in all our life science departments like Biotechnology, Microbiology, Biochemistry, Botany and Human Genetics. We consider CLC bio to be the premier bioinformatics solution provider in the world and this agreement will support education in Andhra University significantly. We are very proud to say that this agreement generates a significant competitive advantage compared to most other universities in India and abroad, in the field of bioinformatics and life sciences.’

Thomas Knudsen, Chief Executive Officer in the CLC bio Group continued,
‘I am honored to be attending the signing ceremony of this important agreement. I am sure that the use of our Educational Solutions - already implemented at a large number of universities in Europe, USA, and India - will bring Andhra University and the affiliated colleges a great step forward in their work to be among the top universities in India and abroad. I am also very happy with the extensive future collaboration which is a part of the agreement, ensuring that CLC bio’s Educational Solutions will always stay at pace with the fast moving educational sector in India.’

The software implementation and training will be carried out by CLC bio India which is headquartered in Hyderabad, Andhra Pradesh.

For more information on CLC bio’s educational solutions, go to:
www.clceducation.com


About CLC bio

CLC bio is the world’s leading full-service bioinformatics solution provider, solely focusing on the development of bioinformatics: software, hardware, data analysis, and custom-designed bioinformatics algorithms. CLC bio is an Apple solution provider and value added reseller.

CLC bio’s mission is to be among the most innovative bioinformatics companies in the 21st century. This is realized through:

Development of bioinformatics software and hardware based on the latest scientific findings
User-friendly, integrated and intuitive cross-platform software solutions
Continuous focus on customer needs and superior customer service
Frequent product updates including the latest IT technologies and bioinformatics algorithms
A flexible IT architecture, enabling customers to buy or develop individualized solutions at a reasonable price

December 19, 2007

CLC bio provides bioinformatics solution for vaccine target development to ACE BioSciences

Filed under: Europe, ChemInformatics, Press Releases, BioInformatics — admin @ 8:01 pm

Odense & Aarhus, Denmark — December 18, 2007 — ACE BioSciences, an emerging pharmaceutical company focused on developing novel protein-based vaccines and antibodies to address infectious diseases, and CLC bio, the world’s leading bioinformatics solutions provider, today announced a collaborative bioinformatics agreement.

Dr. Ingelise Saunders, Chief Executive Officer at ACE BioSciences said,
‘At ACE BioSciences we place considerable emphasis on selecting partners based on their scientific know-how - and in that regard we recognize CLC bio as the leading company within bioinformatics, with a global reputation and internationally renowned experts. We see this collaboration as a significant opportunity to augment and expand our bioinformatics platform to increase efficiency, enhance our analyses, and accelerate our research.’

Dr. Jannick D. Bendtsen, project manager and Senior Scientific Officer at CLC bio commented,
‘We are looking forward to this collaboration, which is scientifically interesting and challenging. The implementation of our customized software will streamline and fast-track analysis and further increase statistical confidence in the selection of novel candidates for inclusion in the ACE BioSciences’ development portfolio. Implementation of automated target validation protocols will increase efficiency and the rate of data throughput, improve quality assurance and enhance data security.’

Under the terms of the agreement, CLC bio will upgrade and expand ACE BioSciences’ existing bioinformatics platform to ensure the company is taking advantage of the most up-to-date, relevant, and innovative software, including state-of-the-art protein vaccine target characterization. In addition, CLC bio will provide greater integration and cross-referencing capabilities, securing for ACE BioSciences the ability to apply more extensive statistical analyses to its databases and laboratory information. CLC bio’s customized solution will strengthen ACE BioSciences’ ability to compare, rank, and prioritize potential vaccine targets.

The solution provided to ACE BioSciences consists of a number of CLC workbenches for DNA, RNA, and protein sequence analysis, supplemented with customized bioinformatics modules that are proprietary for ACE BioSciences

Read more about CLC bio’s customized software solutions on:
www.clcbioconsulting.com

About ACE BioSciences

ACE BioSciences is an emerging pharmaceutical company focused on developing novel protein-based vaccines and antibodies to address infectious diseases. It has unique expertise in the extraction and analysis of the cell surface proteins used by pathogens (eg bacteria, viruses and fungi) to interact with and infect human host cells.

The company’s lead product, ACE393, is an injectable vaccine that is on track to become the world’s first commercial vaccine for Travellers’ Diarrhoea caused by Campylobacter infection, having successfully completed Phase I clinical trials in March 2007.

Campylobacter is one of the greatest causes of gastroenteritis in the developed world as well as a significant contributor to travellers’ diarrhoea. The annual global commercial market for a Campylobacter vaccine is estimated to be worth € 350 million.

ACE BioSciences aims to develop a portfolio of products independently and in collaboration with other companies and as part of that strategy the company signed a collaborative development agreement with the US Naval Medical Research Center (NMRC) to progress ACE393 through Phase II clinical trials. In addition to ACE393, the company is working on ACE537, an oral, Phase I, Enterotoxigenic E Coli (ETEC) vaccine which has the potential to be the first to market in the US and EU and which combats the single biggest cause of travelers diarrhoea. It is also working on a vaccine for Streptococcus pneumoniae, the bacterium responsible for Pneumococcal disease.The market for a Streptococcus product would be multibillion and ACE BioSciences aims to partner the project.

About CLC bio

CLC bio is the world’s leading full-service bioinformatics solution provider, solely focusing on the development of bioinformatics: software, hardware, data analysis, and custom-designed bioinformatics algorithms. CLC bio is an Apple solution provider and value added reseller.

CLC bio’s mission is to be among the most innovative bioinformatics companies in the 21st century. This is realized through:

  • Development of bioinformatics software and hardware based on the latest scientific findings
  • User-friendly, integrated and intuitive cross-platform software solutions
  • Continuous focus on customer needs and superior customer service
  • Frequent product updates including the latest IT technologies and bioinformatics algorithms
  • A flexible IT architecture, enabling customers to buy or develop individualized solutions at a reasonable price

Arena Pharmaceuticals Initiates Second and Third Pivotal Trials Evaluating Lorcaserin for the Treatment of Obesity

Patients with FDA-defined Valvulopathy Permitted to Enroll in 2nd and 3rd Pivotal Trials - Echocardiogram Screening Requirement Eliminated

SAN DIEGO, Dec. 13 /PRNewswire-FirstCall/ — Arena Pharmaceuticals, Inc. today announced the initiation of patient screening in the second and third Phase 3 pivotal trials evaluating the efficacy and safety of its lead drug candidate, lorcaserin hydrochloride, for weight management in overweight and obese patients. Known as BLOSSOM (Behavioral modification and Lorcaserin Second Study for Obesity Management) and BLOOM-DM (Behavioral modification and Lorcaserin for Overweight and Obesity Management in Diabetes Mellitus), these one-year, double-blind, randomized and placebo-controlled trials are expected to collectively enroll approximately 3,750 overweight and obese patients. Consistent with Arena’s proposal, the Food and Drug Administration, or FDA, is allowing patients with FDA-defined valvulopathy to enroll in both BLOSSOM and BLOOM-DM. This is different from the design of the initial lorcaserin pivotal study known as BLOOM, in which echocardiography was used to screen for patients with FDA-defined valvulopathy and exclude those patients from enrolling in the trial. Instead, in BLOSSOM and BLOOM-DM, there are no such echocardiographically defined exclusion criteria, although serial echocardiograms will be obtained to extend the lorcaserin safety database. BLOOM, BLOSSOM and BLOOM-DM comprise the entire planned pivotal trial program for lorcaserin.

“Eliminating the requirement of screening echoes, and receiving permission from the FDA to expand the patient population of the lorcaserin pivotal trial program to include patients with FDA-defined valvulopathy, is a significant and positive variation in the protocol for the second two pivotal trials,” commented Steven R. Smith, M.D., principal investigator in the study and Professor at the Pennington Biomedical Research Center. “This change will allow the pivotal trial program to more fully explore, and develop a more complete understanding of, lorcaserin’s selective mechanism and its safety profile.”

“Given the prevalence and impact of obesity, patients and their physicians need new treatment options,” commented Lee M. Kaplan, M.D., Ph.D., an investigator in the BLOOM, BLOOM-DM and BLOSSOM pivotal trials, Director of the Massachusetts General Hospital Weight Center and Associate Professor of Medicine at Harvard Medical School. “Including a broader representation of overweight patients and patients with obesity as part of the pivotal trial program for lorcaserin, including individuals with more significant valvulopathy and type 2 diabetes, is important for providing a more complete assessment of the safety and efficacy of this agent,” concluded Dr. Kaplan.

The BLOSSOM trial will evaluate 10 mg and 20 mg daily doses (10 mg dosed once or twice daily) of lorcaserin versus placebo over a one-year treatment period in obese patients (Body Mass Index, or BMI, 30 to 45) with or without co-morbid conditions and overweight patients (BMI 27 to 29.9) with at least one co-morbid condition at about 100 sites in the United States. The BLOOM-DM trial will evaluate 10 mg and 20 mg daily doses of lorcaserin versus placebo over a one-year treatment period in obese and overweight patients with type 2 diabetes mellitus at about 45 sites in the United States.

Consistent with the BLOOM trial, diet and exercise will also be included in the BLOSSOM and BLOOM-DM trials in accordance with current FDA guidelines, and the proportion of patients with a 5% or greater weight reduction from baseline at week 52 will be the primary efficacy endpoint. Secondary endpoints include changes in serum lipids and HbA1c and, in the BLOOM-DM trial, other indicators of glycemic control will also be evaluated. In both of these additional studies, all patients will receive echocardiograms at baseline, at month 6, and at the end of the study to assess heart valve function over time. In contrast to the ongoing BLOOM trial, however, there will be no independent monitoring by an Echocardiographic Safety Monitoring Board. The complete lorcaserin Phase 3 pivotal program is planned to enroll a total of approximately 7,000 patients in these three trials. In addition to the planned pivotal trial program, several additional small studies, such as drug interaction and abuse potential studies, will be conducted.

“As we continue advancing our lorcaserin clinical program, we are looking forward to March 2008 when we expect the BLOOM Echocardiographic Safety Monitoring Board’s review of echocardiograms for patients completing 12 months of treatment. We will continue to work with the FDA as we implement the final non-pivotal trial elements of the complete Phase 3 program,” stated William R. Shanahan, M.D., Arena’s Vice President and Chief Medical Officer.

An earlier estimate of the total external clinical costs of the Phase 3 trial program was updated from approximately $125 million to approximately $160 million. The increased estimate is primarily due to the increased number of patients Arena plans to enroll, and to Arena’s initiative to expand the echocardiographic monitoring program by including patients with FDA-defined valvulopathy in the BLOSSOM and BLOOM-DM trials.

Michael J. Fox Foundation Awards $4.4 Million for Development of New Class of Parkinson’s Therapy

NEW YORK, Dec. 18 /PRNewswire-USNewswire/ — The Michael J. Fox Foundation has awarded $4.4 million to jump-start the development of a new class of symptomatic Parkinson’s disease drugs targeting glutamate receptor mGluR4. The funding was awarded to a multidisciplinary team of researchers led by Jeffrey Conn, PhD, of Vanderbilt University under the Foundation’s LEAPS (Linked Efforts to Accelerate Parkinson’s Solutions) 2007 initiative.

The LEAPS 2007 program was funded with a lead gift from the Edmond J. Safra Philanthropic Foundation. The Edmond J. Safra Philanthropic Foundation has been one of the most steadfast supporters of The Michael J. Fox Foundation since its inception.

“Dopamine replacement therapies have long been considered the ‘gold standard’ of Parkinson’s treatment. But they lose efficacy over time, alleviate only some of PD’s symptoms, and cause side effects that can be as debilitating as the disease itself,” said Katie Hood, CEO of MJFF. “Patients don’t think this status quo is good enough, and neither does our Foundation. Dr. Conn and colleagues are aiming to bring about a 180-degree turn in PD treatment by developing an entirely new class of drugs that would bypass the dopamine system altogether.”

The death of dopamine neurons is a hallmark of PD pathology, and Parkinson’s scientists traditionally have focused their efforts on modulating aspects of the dopamine system. But recent insights into the physiology of the basal ganglia (a brain region affected in Parkinson’s disease) have shed light on the potential for treatments that could alleviate PD symptoms by “resetting” brain circuits. The glutamate system in particular has shown promise as a target for such treatments.

Glutamate, like dopamine, is a neurotransmitter — a signaling molecule that plays a role in transporting brain messages and controlling body functions. In previous work, Dr. Conn showed in an animal model that increasing activity of a specific glutamate receptor, mGluR4, may alleviate symptoms of Parkinson’s. In further work supported by MJFF’s Target Validation initiative, his team identified molecules that increase mGluR4 activity. The researchers will now use a combination of medicinal chemistry, molecular biology, and animal studies to engineer these molecules into a compound that can be clinically tested for use as a drug that could provide sustained symptomatic relief.

LEAPS are multi-year, multi-million, multi-disciplinary projects that bring together “all-star” teams of researchers to address questions with significant practical impact on the treatment of Parkinson’s disease. Continued funding is dependent on completion of predetermined milestones at specific stages.

In addition to coordinating principal investigator Dr. Conn, who is professor of pharmacology and director of the Vanderbilt Program in Drug Discovery, this LEAPS team includes:

C. David Weaver, PhD, Research Associate Professor of Pharmacology; Director, Vanderbilt Institute of Chemical Biology High-throughput Screening Facility; Director, New Leads Discovery, Vanderbilt Program in Drug Discovery — Dr. Weaver will oversee the high-throughput screening to identify initially promising lead compounds.

Colleen Niswender, PhD, Research Assistant Professor, Department of Pharmacology; Head, Molecular Pharmacology Team, Vanderbilt Program in Drug Discovery — Once lead compounds have been identified through high-throughput screening, Dr. Niswender will be responsible for screening them in cell-based assays to determine which hold the most promise to move on to testing in animal models.

Carrie K. Jones, PhD, Research Associate Professor, Department of Pharmacology; Head, In Vivo and Behavioral Pharmacology Group, Vanderbilt Program in Drug Discovery — Dr. Jones will spearhead the screening of lead compounds in rodent behavior models of Parkinson’s disease.

Yoland Smith, PhD, Professor, Department of Neurology, Yerkes National Primate Research Center, Emory University — Dr. Smith, an expert in the neurophysiology of primate models of Parkinson’s, will oversee the testing of the most promising lead compounds in the final preclinical phase of the project.

Craig W. Lindsley, PhD, Associate Professor of Pharmacology and Chemistry; Director of Medicinal Chemistry, Vanderbilt Program in Drug Discovery; Director, Vanderbilt University MLSCN (Molecular Libraries Screening Center Network) Chemistry Center and Vanderbilt Institute of Chemical Biology Synthesis Core — Dr. Lindsey, a medicinal chemist, will hold ultimate responsibility for optimizing engineering of the compound that will be tested in the clinic.

December 18, 2007

AIDS researchers find protein that greatly boosts HIV infection

Filed under: Europe, Europe, HIV Research, Press Releases, Drug Development — Fred @ 5:04 pm

German AIDS researchers have discovered a protein common in semen that boosts the infectious potential of HIV 100,000-fold - a remarkable finding that may show how the virus can spread through sexual contact and also suggests new strategies to stop the epidemic.

If scientists can find a drug or chemical that blocks these infection-promoting proteins, it would go a long way toward development of a microbicide, a vaginal cream or gel that could protect sex partners against AIDS.

What is catching scientists’ attention is the 100,000-fold increase. “I was so surprised that I did not believe the numbers,” said Dr. Frank Kirchhoff, leader of the University of Ulm laboratory that found the protein. “But we did the experiment multiple times, and the results were always the same.”

The discovery was made possible by advanced techniques in laboratory screening for tiny proteins. There are more than 900 different kinds in human semen, and these proteins in turn break down into smaller molecular chains that also may carry out important biological tasks.

In this case, researchers at the University of Ulm were screening hundreds of different molecules from semen samples in the hope of finding some that naturally blocked HIV, the virus that causes AIDS.

Instead, they stumbled upon protein fragments that do the opposite. The fragments dramatically boost HIV infection by clustering into microscopic rafts that ferry crowds of virus particles to cell surfaces, like landing craft disgorging invaders on a beach.

Their findings were released today in advance of Friday’s publication of the journal Cell.

Although HIV has been understood to be a sexually transmitted disease for a quarter century, relatively little work has been done in analyzing what role semen may play in its transmission. And, it seems, few scientists have spent much time analyzing what Kirchhoff calls “pools” of donated semen. “People haven’t dissected the individual components of semen,” he said.

The latest work is the product of an emerging field in biotechnology called proteomics, the study of the molecular structure and function of proteins.

The new study suggests that scientists may have been missing something very important. “This is one of the most interesting new perspectives on HIV transmission to emerge in years,” said Dr. Warner Greene, director of the Gladstone Institute of Virology and Immunology in San Francisco.

Greene said the work may solve a mystery that has puzzled AIDS researchers - why a virus that appears weakly infectious in laboratory dishes can spread explosively through sexual contact.

When researchers try to infect human cells under a microscope with HIV, it takes between 1,000 and 100,000 particles of the virus to cause a successful infection. That’s weak, as viral infectivity goes. But when the proteins found by Kirchhoff are added to the mix, it is possible to start a successful infection with as few as three particles of virus.

If such a weak virus can be turned into a monster by a molecule present in semen, it raises the possibility that knocking that molecule out - or even hobbling it - could make HIV suddenly much more difficult to spread.

Greene is so enthusiastic about this discovery that he has started a project to find ways of blocking the protein. But he concedes that this search will not be quick or easy.

Dr. Tony Fauci, director of the National Institute for Allergy and Infectious Diseases, said the science behind the German study is impressive, but the laboratory dish findings are a long way from producing a practical solution for people. “It is a surprising finding, but I would be cautious about how important this is going to be,” he said.

Fauci also noted that sexual transmission is only one route of HIV infection. Women can pass the virus to their newborns with breast milk, where presumably no similar HIV-promoting proteins exist. It is also clear that other factors, such as genital ulcers caused by diseases including herpes and syphilis, have a well-documented role in enhancing transmission of the virus.

University of Pittsburgh researcher Dr. Ian McGowan, a principal investigator with the Microbicide Trials Network - which coordinates National Institutes of Health studies in that field - was skeptical that the results would lead to any immediate advances in HIV prevention. He noted that a new generation of microbicide made from AIDS drugs has already blocked the virus in test tube studies and is headed for clinical trials, so there may be no advantage to a new approach targeting the infection-promoting proteins.

What happens in the laboratory, he said, may have little bearing on what works in people. “New compounds may block HIV in the test tube or in blood cells, but in reality these (microbicide) products need to be used intra-vaginally or intra-rectally,” he said.

The latest findings, however, are almost certain to prompt a closer look at the role these proteins play in HIV transmission. UCSF virologist Dr. Jay Levy, one of the first to isolate the AIDS virus in the early years of the epidemic, said studies may now be conducted to see how prevalent the protein is among at-risk populations. One example could be among HIV-positive men who have sex with unprotected partners, who nevertheless remain uninfected. Semen from the infected men could be tested to see if the protein is there, or is somehow naturally blocked.

The German researchers acknowledge that they do not know precisely how or why the protein they found has such a marked effect on HIV infectivity. The tiny rafts of protein fragments are called fibrils. They are created when sections of a large and common protein in semen, known as PAP, break off and cluster.

Fibrils are thought to resemble a loose collection of sticks, and numerous virus particles hitch a ride on them. It is possible that the sticky fibrils themselves attach to cell surfaces and make it easier for their HIV passengers to gain entry.

One of the more curious twists about the findings is a link between the HIV-enhancing fibrils and Alzheimer’s disease. These fibrils are structurally very similar to biological debris that clutters up the brain tissue of Alzheimer’s patients. It was a totally unrelated finding, that the amyloid fibrils in the brain disease seemed to promote HIV, that led researchers to suspect it when screens found similar fibrils in semen.

Kirchhoff named the structures Semen-Derived Enhancer of Virus Infection, or SEVI.

The discovery is the second major finding of note in HIV research by Kirchhoff’s laboratory. In April, researchers there used a somewhat similar screening process to find in the waste products from kidney dialysis a human protein that appears to naturally block many strains of HIV.

Predicting drug side effects

Filed under: North America, Press Releases, Drug Development — Fred @ 5:01 pm

It would certainly be nice for the pharmaceutical industry to identify potential side effects of a drug before it starts to be tested on humans. Now, a research team at the University of California, San Diego (UCSD) might have found a solution. They have developed a new computational technique to predict drug side effects. Besides identifying adverse effects of a new drug before human clinical trials, this method can also be used to explain the known side effects of drugs already on the market.

You can see above how “selective estrogen receptor modulators, such as the breast-cancer drug tamoxifen, bind to a specific pocket (top, shown with an unrelated molecule used to determine the pocket’s shape) in a protein called estrogen receptor alpha. The modulators may also bind to a similarly shaped pocket (bottom, again shown with a shape-gauging molecule) in another protein called SERCA. If they do, that could explain several of the side effects associated with tamoxifen.” (Credits for images: Credit: Lei Xie, Jian Wang, and Philip Bourne,UCSD; credit for caption: Technology Review)

The UCSD team was led by Philip Bourne with the help of other members of his lab. The two other researchers involved are Lei Xie and Jian Wang. “Conventional test methods screen compounds in animal studies in advance of human trials in the hope of identifying the side effects of promising therapeutics. The UCSD team instead uses the power of computational modeling to screen specific drug molecules using a worldwide repository, the Protein Data Bank (PDB), containing tens of thousands of three-dimensional protein structures.”

Here are additional details provided by the UCSD. “Drug molecules are designed to bind to targeted proteins in order to achieve a therapeutic affect, but if the small drug molecule that functions as a ‘key’ attaches to an off-target protein that has a similar binding site, or ‘lock,’ side effects can result. To identify which proteins might be unintended targets, the UCSD researchers take a single drug molecule and look for how it might bind to as many of the proteins encoded by the human proteome as possible. In this published case study, they looked at Select Estrogen Receptor Modulators (SERMs), a class of drug that includes tamoxifen, to illustrate the novel approach.”

In “Calculating Drugs’ Side Effects,” Technology Review describes the results of the researchers. “Bourne and his team described applying the new method to a class of drugs called selective estrogen receptor modulators. These drugs — including tamoxifen, the most widely prescribed drug for breast cancer — latch onto a protein called estrogen receptor alpha. Tamoxifen is known to cause side effects such as cardiac abnormalities, retinal degradation, and blood clots. All these side effects have one thing in common: they involve disruptions in the ways that calcium ions normally flow through cells, regulating the balance of electrical charges in various cell compartments.”

And her is a comment from Bourne: “‘That would imply that maybe what’s involved here is some protein that involves calcium, as part of the normal calcium flow in the cell.’ And sure enough, the team found that in addition to the lock on estrogen receptor alpha, tamoxifen could fit into a similar lock on a calcium-binding protein known as SERCA. Bourne speculates that when tamoxifen latches onto SERCA, it physically prevents calcium from doing so — potentially leading to the drug’s calcium-related side effects.”

Anyway, simulations cannot always replace experiments. So “the UCSD researchers are continuing their studies, which Bourne says can be applied to any drug on the market for which a structure of the drug bound to the receptor exists in the PDB. Bourne emphasized that results from this approach still needed to be tested experimentally.”

December 15, 2007

Definiens Releases TissueMap 2.0 for Advanced Oncology Research

Filed under: Europe, Press Releases, BioInformatics, Oncology Research — admin @ 5:05 pm

Munich, Germany – December 6th, 2007 – Definiens, the number one Enterprise Image Intelligence™ company, today unveiled the release of Definiens TissueMap 2.0, highlighting the company’s focus on oncology research. The image analysis software application is especially designed for the detailed, automated morphometric quantification of biomarkers of nuclei or cell bodies in epithelial tumors or xenografts. The application features the detection of viable and necrotic tissue in xenografts, as well as regions of IHC (DAB) positively stained nuclei or cells in the viable tissue. This enables pathologists to automate the process of complex or highly apoptotic xenograft analysis in oncology research.

Effective imaging technologies support pharmaceutical development in oncology

The discovery and application of oncology biomarkers have enhanced opportunities for individual disease treatment by identifying new drug targets. They therefore have a significant impact on the entire process of drug development including the emergence and growth of imaging technologies utilized to acquire accurate measurements of disease parameters.
The effective use of imaging technologies, such as Definiens TissueMap 2.0, significantly improves the selection and prioritization of quality candidates early in the drug development pipeline. This results in substantial cost savings and faster time-to-market as poorer drug candidates are removed early in the discovery process.

Assessment of any biomarkers targeting an antigen located in the nucleus or cell body

Definiens TissueMap 2.0 reliably identifies areas and structures of interest in image data allowing researchers to distinguish between viable and necrotic tumor areas and to quantify markers. It offers:

o Full tissue slide analysis

o Fast and reproducible results

o Platform independence and connectivity

o Easy customization

o Precise measurement of morphological parameters

Definiens TissueMap 2.0 encompasses the assessment of any biomarkers targeting an antigen located in the nucleus such as proliferation markers (Ki67, PCNA, BrdU, etc.), apoptosis markers such as Cap3 as well as estrogen or progesterone receptors. Antibodies or markers co-/located in the cell body, such as cytokeratines (CD31, AE1/3, etc.) and other proteins (CD45, CD23 or similar) can also be evaluated.

Comprehensive software for quantification regardless of staining methodology

Definiens TissueMap 2.0 enables the quantification of biomarker expression patterns in image data regardless of staining methodology. The software application effectively analyzes image data in oncology research, including cases involving poor staining technique and data obtained from heterogeneous equipment.

Definiens TissueMap 2.0 enables the automated detection of relevant morphological structure in tissue and tumor sections. It improves research results through increased data accuracy, consistency and reproducibility.

New information concerning Definiens TissueMap 2.0 was presented at the 7th World Drug Discovery & Development Summit 2007 in Cologne, Germany, December 4-5, 2007, which brought together leading pharmaceutical and biotech professionals to discuss key scientific and strategic challenges.

Definiens in Life Sciences

By automating image analysis on an enterprise level, Definiens supports Life Science organizations to analyze and interpret vast numbers of images accurately and consistently. Definiens improves the measurement of cell assays, the examination of tissue samples and the interpretation of non-invasive imaging, enabling high-content screening, digital pathology and translational medicine.

About Definiens

Definiens is the number one Enterprise Image Intelligence company for analyzing and interpreting images on every scale, from microscopic cell structures to satellite images. The Definiens Cognition Network Technology®, developed by Nobel laureate Prof. Gerd Binnig and his team, is an advanced and robust context-based technology designed to fulfill the image analysis requirements of the Life and Earth sciences markets. The technology is modeled on the powerful human cognitive perception processes to extract intelligence from images. Definiens provides organizations with faster image analysis results, allowing deeper insights enabling better business decisions. The company is headquartered in Munich, Germany and has offices throughout the United States. Further information is available at www.definiens.com.

Definiens, Definiens Cellenger, Definiens Cognition Network Technology, Definiens eCognition, Enterprise Image Intelligence and Understanding Images are trademarks or registered trademarks of Definiens.

CLC bio accelerates biomedical research with new RNA sequence analysis software

Filed under: Europe, Press Releases, RNA Reasearch, BioInformatics — admin @ 4:15 pm

Aarhus, Denmark — December 14th, 2007 — CLC bio, the world’s leading bioinformatics solution provider, today announced the release of version 2.0 of CLC RNA Workbench. Among a wide variety of new features, this new release brings user-friendly versions of partition function calculation for RNA secondary structure and minimum energy free scanning - functions previously only available through highly advanced scripting, are now available through a graphical interface for everyone working with RNA research.

Peter Johannes Steffensen, PhD in Mathematics and algorithm expert at CLC bio, states,
‘We have developed our own minimum free energy algorithm and graphical interface to scan for local structure content - a world’s first! This feature is ideal for full genome scans of viruses, or for scanning mRNA for the presence of structural signals. For scientists working with RNA biology this is a very smooth and fast feature for computing significant local RNA structures based on minimum free energy calculation.

Dr. Roald Forsberg, Senior Scientific Officer at CLC bio, continues,
‘Today RNA biology is becoming important in all areas of biomedical research. We are now introducing a graphical interface to view different applications of partition function calculations for RNA secondary structure - another world’s first. With a few clicks of the mouse, scientists are now able to determine the probability for RNA structure elements like base pairs and unpaired regions. This is extremely useful for researchers who design molecules for RNA interference, and need to statistically test complex structure hypotheses.

By introducing a smooth and graphical approach to these functions, CLC bio helps accelerate viral biology research and reaffirms CLC RNA Workbench’s position in the market as the only integrated and professional solution which can help RNA researchers to a considerably more efficient workflow, and thereby save precious time in the research phases. Furthermore, researchers will get higher quality results, due to easy and user-friendly access to the cutting edge algorithms included in CLC RNA Workbench.

CLC bio offers a free 30-day trial of CLC RNA Workbench which can be downloaded from:
www.clcbio.com/rna

About CLC bio
CLC bio is the world’s leading full-service bioinformatics solution provider, solely focusing on the development of bioinformatics: software, hardware, data analysis, and custom-designed bioinformatics algorithms. CLC bio is an Apple solution provider and value added reseller.

CLC bio’s mission is to be among the most innovative bioinformatics companies in the 21st century. This is realized through:

Development of bioinformatics software and hardware based on the latest scientific findings
User-friendly, integrated and intuitive cross-platform software solutions
Continuous focus on customer needs and superior customer service
Frequent product updates including the latest IT technologies and bioinformatics algorithms
A flexible IT architecture, enabling customers to buy or develop individualized solutions at a reasonable price

December 13, 2007

High Throughput Screening 2007: HighTech Business Decisions Reports New Strategies,

Filed under: USA and Canada, Press Releases, HT Screening, Drug Development — Fred @ 5:02 pm
SAN JOSE, Calif.--(Business Wire)--HTS laboratories continue to evolve their processes and strategies
to increase their success rates and improve efficiencies in their drug
discovery efforts. New strategies include the use of phenotypic and
pathway-based assays in primary or secondary screening, the use of new
targets and the expansion in the diversity of compounds screened for
new drug candidate leads. The Directors at HTS laboratories also plan
to employ new technologies, including the use of label-free
technologies and new detection systems to aid in finding new drug
candidate leads.

HTS laboratories continue to show year to year success at
producing new drug candidates. Fifty-five directors from HTS
laboratories participating in this recently published study, High
Throughput Screening 2007: New Strategies, Success Rates and Use of
Enabling Technologies, identified 163 drug candidates that originated
from their HTS laboratories, a significant increase from HighTech
Business Decisions' earlier study. With new HTS laboratories funded
through NIH or other private foundations beginning to ramp-up their
operations, this new report includes analysis and data from interviews
with HTS laboratory directors at these centers to better understand
their plans and their impact on drug discovery efforts.

William Downey, President of HighTech Business Decisions,
explains, "HTS laboratories are taking on new challenges as they
expand their role in drug discovery. In the past two years, the
industry has seen consolidation in HTS laboratories as many
pharmaceutical companies have either merged or acquired other
operations. This consolidation along with the challenges to improve
drug discovery efforts is leading to changes in the way particular HTS
laboratories operate. In addition to the changes in commercial HTS
laboratories, over the past two years publicly funded and
non-commercial HTS laboratories have been started, and in the next few
years these laboratories will ramp-up their operations." HighTech
Business Decisions extensively interviewed 55 Directors at HTS
laboratories in Asia, Europe and North America.

Theravance Announces Initiation of Phase 1 Clinical Study with Investigational Medicine for Respiratory Disease

Theravance, Inc. (NASDAQ: THRX) today announced that GlaxoSmithKline plc (GSK) initiated subject screening in a Phase 1 clinical study designed to assess the safety, tolerability, and pharmacokinetics of an investigational, inhaled bronchodilator, GSK1160724, for the treatment of chronic obstructive pulmonary disease (COPD). The compound was discovered by Theravance and is being developed by GSK under the parties’ strategic alliance agreement.

GSK1160724 is an inhaled, long-acting muscarinic antagonist (LAMA) discovered by Theravance through the application of multivalent drug design in a drug discovery program dedicated to finding new medicines for respiratory diseases such as COPD and asthma. The LAMA program is one of three respiratory programs under joint development by GSK and Theravance.

Inhaled muscarinic antagonists are frequently used as bronchodilators for COPD and work by inhibiting muscarinic receptors in the airways, which leads to improved lung function. Theravance’s intent was to discover LAMA compounds that are highly lung-selective and have a prolonged effect. Higher lung selectivity should result in improved tolerability.

“The goal of our program is to develop an effective once-a-day inhaled medicine that is better tolerated than the market leaders,” said Michael Kitt, MD, Senior Vice President of Development at Theravance. “In addition, at higher doses, a more lung-selective LAMA might offer improved efficacy with comparable or improved tolerability.”

About Theravance

Theravance is a biopharmaceutical company with a pipeline of internally discovered product candidates. Theravance is focused on the discovery, development and commercialization of small molecule medicines across a number of therapeutic areas including respiratory disease, bacterial infections and gastrointestinal motility dysfunction. Of the six programs in development, four are in late stage — its telavancin program focusing on treating serious Gram-positive bacterial infections with Astellas Pharma Inc., the Gastrointestinal Motility Dysfunction program, the Beyond Advair collaboration with GlaxoSmithKline plc, and TD-1792 for the treatment of serious Gram-positive bacterial infections. By leveraging its proprietary insight of multivalency toward drug discovery focused on validated targets, Theravance is pursuing a next generation strategy designed to discover superior medicines in areas of significant unmet medical need. For more information, please visit the company’s web site at www.theravance.com.

THERAVANCE®, the Theravance logo, and MEDICINES THAT MAKE A DIFFERENCE® are registered trademarks of Theravance, Inc.

This press release contains certain “forward-looking” statements as that term is defined in the Private Securities Litigation Reform Act of 1995 regarding, among other things, statements relating to goals, plans, objectives and future events. Theravance intends such forward-looking statements to be covered by the safe harbor provisions for forward-looking statements contained in Section 21E of the Exchange Act and the Private Securities Litigation Reform Act of 1995. Examples of such statements include statements relating to the goals, timing and expected results of clinical and preclinical studies, statements regarding the potential benefits and mechanisms of action of drug candidates, statements concerning the goals and timing of seeking regulatory approval of our product candidates, the enabling capabilities of Theravance’s approach to drug discovery and its proprietary insights, statements concerning expectations for product candidates through development and commercialization and projections of revenue and other financial items. These statements are based on the current estimates and assumptions of the management of Theravance as of the date of this press release and are subject to risks, uncertainties, changes in circumstances, assumptions and other factors that may cause the actual results of Theravance to be materially different from those reflected in its forward-looking statements. Important factors that could cause actual results to differ materially from those indicated by such forward-looking statements include, among others, the potential that results of clinical or preclinical studies indicate product candidates are unsafe, ineffective, inferior or not superior, and delays or failure to achieve regulatory approvals and risks of collaborating with third parties to develop and commercialize products. These and other risks are described in greater detail under the heading “Risk Factors” contained in Item 1A of Theravance’s Quarterly Report on Form 10-Q filed with the Securities and Exchange Commission (SEC) on November 7, 2007 and the risks discussed in our other filings with the SEC. Given these uncertainties, you should not place undue reliance on these forward-looking statements. Theravance assumes no obligation to update its forward-looking statements.

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