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Archive for the ‘Alzheimer’s disease’ Category

Screen for molecules that inhibit formation of A-beta oligomers

Alzheimer’s disease (AD) is a devastating neurological disorder characterized by the deposition of aggregated proteins in the brain in the form of extracellular beta-amyloid in senile plaques and intracellular tau in neurofibrillary tangles. A current approach towards treatment of Alzheimer’s disease is by using inhibitors of amyloid beta aggregation. Current screening protocols for inhibitors of amyloid beta aggregation generally involve first using assays for fibers, e.g, thioflavin T binding to detect inhibition of fiber formation or fiber disassembly, and the compounds uncovered in these screens are then examined for effects on oligomer formation. This approach for screening compounds having amyloid beta aggregation inhibition properties is an indirect one, but is used because oligomers do not bind thioflavin T and there is no easy assay for their appearance. A compound which only inhibits oligomer formation, but does not inhibit protective fiber growth would never be detected by this indirect approach. The present UIC invention overcomes these deficiencies and provides an easy and direct assay in yeast for high-throughput screening of compounds that can inhibit amyloid-beta oligomer formation but does not inhibit protective fiber growth.
Description/Details

The present UIC invention is directed towards a yeast high-throughput screen for detecting compounds that inhibit amyloid-beta aggregation. It also provides a yeast in vivo assay for amyloid-beta aggregation. The assay involves replacing the N-terminus of the translational release factor, Sup35, with Abeta-42mer, and examining the activity of said construct in an ade1-14 yeast strain in which the normal Sup35 gene was deleted, and inhibition of release factor translation termination activity of the fusion construct can be assayed for growth on –Ade medium.
Applications

Screening for compounds that inhibit amyloid-beta oligomer formation
Benefits

• Easily detects compounds that inhibit amyloid-beta oligomer formation but do not inhibit protective fiber growth Selects compounds with more “drug-like” properties (e.g., membrane permeability and cytotoxicity effects) compared to biochemical HTS screens, Clean read-out against a null background in a heterologous, yet eukaryotic environment, compared to mammalian cells, Self-renewal system, Simple handling, Fast discrimination of real hits from false positives, Inexpensive culture conditions
source: otm.illinois.edu

Neuronetrix’ COGNISIONâ„¢ System

Alzheimer’s disease is a chronic neurodegenerative disease of the brain which afflicts roughly 5 million individuals in the United States.  Approximately 10% of those over 65 and 50% of those over 85 will die as a result of Alzheimer’s disease.

Even with several therapies available to treat Alzheimer’s disease, there still is a significant gap between the onset of the disease and point at which treatment actually begins.  This treatment gap is directly tied to the challenges in diagnosing the disease early, before the significant loss of memory, cognition, and activities of daily living.  Patients, doctors, caregivers, and the pharmaceutical industry, are looking for and demanding a solution to this problem.

Neuronetrix’ COGNISIONâ„¢ System will, for the first time, directly detect the abnormal cognitive effects of Alzheimer’s disease!  This will facilitate an earlier and more accurate diagnosis than is currently available.  Physicians will use the COGNISIONâ„¢ test to determine which patients would benefit from the available drug treatments.  The system can also be used to monitor the efficacy of the prescribed therapy.

With the aging of America and the proliferation of new Alzheimer’s therapies, the market for Alzheimer’s screening could approach several billion dollars per year in the United States alone.

Following the validation of the COGNISION™ System for Alzheimer’s disease, Neuronetrix will expand into other neurodiagnostic markets such as ADHD, dyslexia, and depression.

http://www.neuronetrix.com/

New compounds may help develop drugs for degenerative nerve diseases

Scientists at Duke University Medical Centre have discovered certain compounds that could lead to promising new drugs for degenerative nerve diseases, such as Huntington’s disease, Alzheimer’s disease and Parkinson’s disease.

Misfolded proteins in nerve cells (neurons) are a common factor in all of these diseases.

These new compounds improve a cell’s ability to properly “fold” proteins.

It activates a master regulator to increase the supply of “protein chaperone” molecules that help fold proteins properly.

The scientists further explored one of the candidate molecules to activate the master regulator of chaperone gene expression, Heat Shock Factor 1 (HSF1), to learn whether it would work in model systems of Huntington’s disease, a devastating neurodegenerative disease of protein misfolding.

They were able to show that the molecule stimulated protein chaperones in cells and in an animal system.

The damage to early-state rat neurons was much lower in cells pre-treated with the HSF1 activator, and damage to the neurons of fruit flies that had a Huntington’s-like disorder was also greatly reduced.

The study provides a new approach to address the root cause of these diseases – protein misfolding.

“The advantage of our screen is that it identifies molecules that can elevate the levels of chaperones without inducing cellular stress and that don’t inhibit a key protein chaperone called Hsp90 that is needed for cells to function normally,” said senior author Dennis J. Thiele, Ph.D., Professor of Pharmacology and Cancer Biology.

“We found a creative way to identify new molecules that can activate the body’s natural protein folding machinery,” he added.

Lead author Daniel Neef, Ph.D., says they used genetically altered yeast to find compounds that might aid chaperone development.

The study appears online in PLoS Biology. (ANI)

New class of brain-protecting drugs emerging

Researchers have identified a compound that mimics one of the brain’s own growth factors and can protect brain cells against damage in several animal models of neurological disease.

7,8-dihydroxyflavone is a member of the flavonoid family of chemicals, which are abundant in fruits and vegetables. The compound’s selective effects suggest that it could be the founder of a new class of brain-protecting drugs.

The results were published online this week in the Proceedings of the National Academy of Sciences.

Investigators at Emory University School of Medicine, led by Keqiang Ye, PhD, associate professor of pathology and laboratory medicine, were searching for a way to mimic a protein found in the brain called BDNF (brain-derived neurotrophic factor).

“BDNF has been studied extensively for its ability to protect neurons vulnerable to degeneration in several diseases, such as ALS, Parkinson’s and Alzheimer’s disease,” Ye says. “The trouble with BDNF is one of delivery. It’s a protein, so it can’t cross the blood-brain barrier and degrades quickly.”

Working with Ye, postdoctoral fellow Sung-Wuk Jang sifted through a library of chemicals to find those that could stimulate one of the proteins on the surfaces of neurons that BDNF binds to. They could show that 7,8-dihydroxyflavone sends survival signals to brain cells by pulling together two TrkB receiver-dish molecules, just like BDNF does.

Moreover, it is active in the brain when injected into the body cavity, meaning that it can cross the blood-brain barrier. Ye says many experimental “neuroprotectant” drugs have been unsuccessful in clinical trials for diseases such as stroke and Parkinson’s over the last decade.

“What’s different is this is a new pathway, offering us new opportunities,” he says. “This is the first molecule we’ve found that specifically triggers TrkB.”

7,8-dihydroxyflavone could partially prevent the death of neurons in experimental models of three neurological diseases:

  • Seizure: Mice treated with the stimulant kainic acid
  • Stroke: Loss of blood flow induced in mice by blocking a cerebral artery
  • Parkinson’s disease: Mice treated with a toxin that kills the same neurons affected by Parkinson’s

To show that the effects of 7,8-dihydroxyflavone depended on TrkB, the authors used mice with a modified TrkB gene, which makes their neurons vulnerable to a chemical that is not otherwise toxic. That chemical could inhibit the effects of 7,8-dihydroxyflavone.

7,8-dihydroxyflavone is a member of a family of antioxidant compounds naturally found in foods ranging from cherries to soybeans. Tests in animals indicate that the compound has low chronic toxicity, Ye says. In clinical trials, BDNF itself can have side effects such as sensory alterations, weight loss or nausea.

“It is likely that many people take in small amounts of 7,8-dihydroxyflavone in their diets,” Ye says. “But drinking green tea or eating apples doesn’t give you enough for a sustained effect.”

In the initial screening process, several flavonoid compounds had similar properties to 7,8-dihydroxyflavone. Ye says his laboratory has already identified compounds that are several times more active. The next step is more animal studies to choose compounds likely to have the best drug profiles: stable and non-toxic.

Manuel Yepes, MD, assistant professor of neurology at Emory University School of Medicine, and his colleagues performed the stroke model experiments. Gary Miller, PhD, associate professor in Emory’s Rollins School of Public Health, and his colleagues performed the Parkinson’s-simulating toxin experiments.

Investigators from Georgia State University, UCLA, and the Centers for Disease Control and Prevention contributed to the research, which was supported by the National Institutes of Health.

Ye is an inventor of novel technology related to this research. Under Emory policies, he is eligible to receive a portion of any royalties or fees received by Emory from this technology. These relationships have been reviewed and approved by Emory University in compliance with its conflict of interest policies.

S.W. Jang, X. Liu, M. Yepes, K.R. Shepherd, G.W. Miller, Y. Liu, W.D. Wilson, G. Xiao, B. Blanchi, Y.E. Sun, and K. Ye.

A selective TrkB agonist with potent neurotrophic activities by 7,8-dihydroxyflavone. PNAS ##,## (2010)

Compounds that help protect nerve cells discovered by Duke team

DURHAM, N.C. – Scientists at Duke University Medical Center have found some compounds that improve a cell’s ability to properly “fold” proteins and could lead to promising drugs for degenerative nerve diseases, including Huntington’s disease, Alzheimer’s disease and Parkinson’s disease.

Misfolded proteins in nerve cells (neurons) are a common factor in all of these diseases. The Duke team has identified many new chemicals that activate a master regulator to increase the supply of “protein chaperone” molecules that help fold proteins properly.

The scientists further explored one of the candidate molecules to activate the master regulator of chaperone gene expression, Heat Shock Factor 1 (HSF1), to learn whether it would work in model systems of Huntington’s disease, a devastating neurodegenerative disease of protein misfolding.

They were able to show that the molecule stimulated protein chaperones in cells and in an animal system. The damage to early-state rat neurons was much lower in cells pre-treated with the HSF1 activator, and damage to the neurons of fruit flies that had a Huntington’s-like disorder was also greatly reduced.

Previous studies suggested that elevating the abundance of protein chaperones is effective in treating cell and animal models of Huntington’s and Parkinson’s diseases. This work provides a new approach to address the root cause of these diseases — protein misfolding. Earlier attempts had used heat shock and other approaches that stress a nerve cell in order to produce more chaperone molecules, but at a cost of damaging the cell to save it.

“The advantage of our screen is that it identifies molecules that can elevate the levels of chaperones without inducing cellular stress and that don’t inhibit a key protein chaperone called Hsp90 that is needed for cells to function normally,” said senior author Dennis J. Thiele, Ph.D., Professor of Pharmacology and Cancer Biology. “We found a creative way to identify new molecules that can activate the body’s natural protein folding machinery.”

The research was published in the Jan. 19 online issue of PLoS Biology.

Lead author Daniel Neef, Ph.D., says they used genetically altered yeast to find compounds that might aid chaperone development. The scientists took yeast with a deleted HSF1 (master regulator) gene and inserted the related human HSF1 gene. These yeast, however, still weren’t able to activate human HSF1 on their own, and in effect, died. They needed an additional molecule to make human HSF1 become active.

The team put these “humanized yeasts” into wells and started testing compounds that would provide the missing link. In several of the wells, if the compound worked, the yeast started multiplying. “Out of over 12,000 compounds tested from chemical libraries, about 50 compounds worked,” Neef said. The team decided to explore one of these compounds (HSF1A) in further experiments.

“The humanized yeast-based screening results in our study provide a way to identify new classes of small molecules, small enough to penetrate the blood-brain barrier to work in neurons, in flies as well as in humans,” Thiele said. “These small molecules may be effective therapies in neurodegenerative diseases caused by protein conformational disorders such as Huntington’s, Alzheimer’s and Parkinson’s disease.”

The scientists found that HSF1A could stimulate more protein chaperones and reduce the protein misfolding. They showed that adding a small amount of HSF1A to the developing rat neurons kept the proteins dissolved throughout the cell, rather than clumping visibly as speckled areas (as seen under microscopes).

“We enhanced the cells’ viability by four or five times by pre-treating them with this molecule,” Neef said. “Otherwise, the cells would have died.”

They used fruit flies with Huntington’s disease for experiments to prove that the principle would work in an animal. Adding HSF1A to the fly’s food produced more chaperone molecules in their neurons. This suggests that the molecule could travel from the fly’s stomach into its circulation and cross a barrier to the fly brain.

In the key experiment, the Huntington’s disease flies received either their usual food or food plus HSF1A. Those with untreated food developed eyes with dying photoreceptor neurons and lacking the normal red color. Those that ate HSF1A went on to have normal-colored eyes, indicating a repair had taken place, just by eating food laced with the promising compound.

source: eurekalert.org

Proteins That Might Contribute to Memory Loss and Alzheimer’s Disease Identified

ScienceDaily (Jan. 17, 2010) — A scientific group led by the Translational Genomics Research Institute (TGen) have identified three kinases, or proteins, that dismantle connections within brain cells, which may lead to memory loss associated with Alzheimer’s disease.

These findings, the results of a multi-year TGen study, are published in this month’s edition of BMC Genomics in a paper titled: High-content siRNA screening of the kinome identifies kinases involved in Alzheimer’s disease-related tau hyperphosphorylation.The three kinases were found to cause a malfunction in tau, a protein critical to the formation of the microtubule bridges within brain cells, or neurons. These bridges support the synaptic connections that, like computer circuits, allow neurons to communicate with each other.

“The ultimate result of tau dysfunction is that neurons lose their connections to other neurons, and when neurons are no longer communicating, that has profound effects on cognition — the ability to think and reason,” said Dr. Travis Dunckley, an Associate Investigator in TGen’s Neurodegenerative Research Unit and the scientific paper’s senior author.

Tau performs a critical role in the brain by helping bind together microtubules, which are sub-cellular structures that create scaffolding in the neurons, allowing them to stretch out along bridges called axons. The axons support the synaptic, or chemical, connections with other neurons.

Under normal circumstances, kinases regulate tau by adding phosphates. This process, called tau phosphorylation, enables the microtubules to unbind and then bind again, allowing brain cells to connect and reconnect with other brain cells.

“That facilitates synaptic plasticity. It facilitates the ability of people to form new memories — to form new connections between different neurons — and maintain those memories. So, it’s an essential function,” Dr. Dunckley said.

However, sometimes the tau protein becomes hyperphosphorylated, a condition in which the tau creates neurofibrillary tangles, one of the signature indicators of Alzheimer’s.

“When tau protein is hyperphosphorylated, the microtubule comes apart — basically destroying that bridge — and the neurons can no longer communicate with each other,” Dr. Dunckley said.

TGen investigators created sophisticated tests to look at all 572 known and theoretical kinases within human cells. They identified 26 associated with the phosphorylation of tau. Of these 26, three of them — EIF2AK2, DYRK1A and AKAP13 — were found to cause hyperphosphorylation of tau, permanently dismantling the microtubule bridges.

“This paper shows, for the first time, these three kinases affect Alzheimer’s disease-relevant tau hyperphosphorylation, in which most of the tau protein is now driven into a permanently phosphorylated form,” Dr. Dunckley said.

Dr. Eric Reiman, clinical director of TGen’s Neurogenomics Division and executive director of the Banner Alzheimer’s Institute, explained that tau holds together the skeleton inside neurons. When phosphate molecules stick to tau proteins, the skeleton falls apart and the neurons begin to retract their synaptic branches and die, leading to memory loss and thinking problems.

In this study, researchers used a molecular tool called siRNA to screen the entire human genome, said Dr. Reiman, a co-author of the scientific paper. This tool enabled the TGen-led team to discover which proteins, when genetically turned off, prevent phosphate molecules from sticking to tau. The three kinases, or proteins, that appear to contribute to the formation of brain tangles, can now be targeted by protein-inhibitor drugs.

“This study used a powerful tool to discover three proteins that may be involved in tangle formation. If safe and well-tolerated tangle-busting medications can be developed, they offer great promise in the treatment of Alzheimer’s disease,” said Dr. Reiman, who also is Director of the Arizona Alzheimer’s Consortium.

The next step will be to identify drug compounds that can negate the effects of the three kinases linked to tau hyperphosphorylation.

“The reason that we did this study was to identify therapeutic targets for Alzheimer’s disease, whereby we could modify the progression of tau pathology,” Dr. Dunckley said. “This was a screen to identify what the relevant targets are. Now, we want to match those targets to treatments.”

TGen’s collaborators in the study included: the Department of Neurology at the Mayo Clinic in Jacksonville, Fla.; the Center for Alzheimer’s Research at the Sun Health Institute in Sun City, Ariz.; Banner Alzheimer’s Institute in Phoenix, Ariz.; the Department of Psychiatry at the University of Arizona; and the Arizona Alzheimer’s Consortium, a group of nine institutes that cooperatively study Alzheimer’s disease.

source: sciencedaily.com

Forget to take your Ginkgo biloba? Turns out, it doesn’t matter

Among the natural products on pharmacy shelves, I was rooting for Ginkgo biloba for the prevention of dementia. For one, dementia is a horrible illness. Secondly, currently available drugs for Alzheimer’s disease (AD) have little meaningful effect. Thirdly, preliminary data with ginkgo for AD looked encouraging. I recall reading this systematic review back in 2000. One sentence jumped out at me (the bolding is mine):

We conclude that for selegiline, vitamin E, lecithin, linopirdine, and propentofylline the published data do not provide support for efficacy. Based on the evidence we reviewed, it is our conclusion that donepezil, metrifonate and rivastigmine, however, all provide statistically significant modest benefit on cognitive performance and global functioning to the elderly with probable AD who are eligible for inclusion in clinical trials. The magnitude of the effect is similar for all of the medications. The results from the trials of ginkgo biloba are promising but the effects are smaller than those from the above mentioned therapies.

So the effect, while weak, was just about as bad as the prescription alternatives. For a “natural” remedy, that’s pretty good. But as with most small clinical trials, what appears to be clinically and statistically significant usually disappears when larger, more rigorous trials are conducted. And that seems to be the case now, with a publication in the December 23, 2009 issue of the Journal of the American Medical Association. But before we dive into the trial, let’s look at why ginkgo is even being studied at all.

The Background