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Archive for the ‘BioInformatics’ Category

CLC bio provides bioinformatics educational solutions to Andhra University and 25 affiliated colleges

Visakhpatnam, Andhra Pradesh, India – December 20, 2007 — CLC bio today announced the signing of a Memorandum of Understanding at an official ceremony at Andhra University, one of the most prestigious universities in India.

Under the agreement, Andhra University and 25 affiliated post graduate colleges will implement CLC bio’s educational solutions as an integrated part of their curriculum. CLC bio provides their top-line sequence analysis software, CLC Combined Workbench, to the university and colleges as well as training of the teachers and provision of customized education materials like PowerPoint slides, exercises, and more.

At the signing ceremony, Professor L. Venu Gopal Reddy, Vice Chancellor of Andhra University stated,
‘Its our great pleasure to announce this collaboration with CLC bio India. We are very happy to state that from now on Andhra University will be a dedicated user of CLC bio’s bioinformatics solutions in all our life science departments like Biotechnology, Microbiology, Biochemistry, Botany and Human Genetics. We consider CLC bio to be the premier bioinformatics solution provider in the world and this agreement will support education in Andhra University significantly. We are very proud to say that this agreement generates a significant competitive advantage compared to most other universities in India and abroad, in the field of bioinformatics and life sciences.’

Thomas Knudsen, Chief Executive Officer in the CLC bio Group continued,
‘I am honored to be attending the signing ceremony of this important agreement. I am sure that the use of our Educational Solutions – already implemented at a large number of universities in Europe, USA, and India – will bring Andhra University and the affiliated colleges a great step forward in their work to be among the top universities in India and abroad. I am also very happy with the extensive future collaboration which is a part of the agreement, ensuring that CLC bio’s Educational Solutions will always stay at pace with the fast moving educational sector in India.’

The software implementation and training will be carried out by CLC bio India which is headquartered in Hyderabad, Andhra Pradesh.

For more information on CLC bio’s educational solutions, go to:
www.clceducation.com


About CLC bio

CLC bio is the world’s leading full-service bioinformatics solution provider, solely focusing on the development of bioinformatics: software, hardware, data analysis, and custom-designed bioinformatics algorithms. CLC bio is an Apple solution provider and value added reseller.

CLC bio’s mission is to be among the most innovative bioinformatics companies in the 21st century. This is realized through:

Development of bioinformatics software and hardware based on the latest scientific findings
User-friendly, integrated and intuitive cross-platform software solutions
Continuous focus on customer needs and superior customer service
Frequent product updates including the latest IT technologies and bioinformatics algorithms
A flexible IT architecture, enabling customers to buy or develop individualized solutions at a reasonable price

CLC bio provides bioinformatics solution for vaccine target development to ACE BioSciences

Odense & Aarhus, Denmark — December 18, 2007 — ACE BioSciences, an emerging pharmaceutical company focused on developing novel protein-based vaccines and antibodies to address infectious diseases, and CLC bio, the world’s leading bioinformatics solutions provider, today announced a collaborative bioinformatics agreement.

Dr. Ingelise Saunders, Chief Executive Officer at ACE BioSciences said,
‘At ACE BioSciences we place considerable emphasis on selecting partners based on their scientific know-how – and in that regard we recognize CLC bio as the leading company within bioinformatics, with a global reputation and internationally renowned experts. We see this collaboration as a significant opportunity to augment and expand our bioinformatics platform to increase efficiency, enhance our analyses, and accelerate our research.’

Dr. Jannick D. Bendtsen, project manager and Senior Scientific Officer at CLC bio commented,
‘We are looking forward to this collaboration, which is scientifically interesting and challenging. The implementation of our customized software will streamline and fast-track analysis and further increase statistical confidence in the selection of novel candidates for inclusion in the ACE BioSciences’ development portfolio. Implementation of automated target validation protocols will increase efficiency and the rate of data throughput, improve quality assurance and enhance data security.’

Under the terms of the agreement, CLC bio will upgrade and expand ACE BioSciences’ existing bioinformatics platform to ensure the company is taking advantage of the most up-to-date, relevant, and innovative software, including state-of-the-art protein vaccine target characterization. In addition, CLC bio will provide greater integration and cross-referencing capabilities, securing for ACE BioSciences the ability to apply more extensive statistical analyses to its databases and laboratory information. CLC bio’s customized solution will strengthen ACE BioSciences’ ability to compare, rank, and prioritize potential vaccine targets.

The solution provided to ACE BioSciences consists of a number of CLC workbenches for DNA, RNA, and protein sequence analysis, supplemented with customized bioinformatics modules that are proprietary for ACE BioSciences

Read more about CLC bio’s customized software solutions on:
www.clcbioconsulting.com

About ACE BioSciences

ACE BioSciences is an emerging pharmaceutical company focused on developing novel protein-based vaccines and antibodies to address infectious diseases. It has unique expertise in the extraction and analysis of the cell surface proteins used by pathogens (eg bacteria, viruses and fungi) to interact with and infect human host cells.

The company’s lead product, ACE393, is an injectable vaccine that is on track to become the world’s first commercial vaccine for Travellers’ Diarrhoea caused by Campylobacter infection, having successfully completed Phase I clinical trials in March 2007.

Campylobacter is one of the greatest causes of gastroenteritis in the developed world as well as a significant contributor to travellers’ diarrhoea. The annual global commercial market for a Campylobacter vaccine is estimated to be worth € 350 million.

ACE BioSciences aims to develop a portfolio of products independently and in collaboration with other companies and as part of that strategy the company signed a collaborative development agreement with the US Naval Medical Research Center (NMRC) to progress ACE393 through Phase II clinical trials. In addition to ACE393, the company is working on ACE537, an oral, Phase I, Enterotoxigenic E Coli (ETEC) vaccine which has the potential to be the first to market in the US and EU and which combats the single biggest cause of travelers diarrhoea. It is also working on a vaccine for Streptococcus pneumoniae, the bacterium responsible for Pneumococcal disease.The market for a Streptococcus product would be multibillion and ACE BioSciences aims to partner the project.

About CLC bio

CLC bio is the world’s leading full-service bioinformatics solution provider, solely focusing on the development of bioinformatics: software, hardware, data analysis, and custom-designed bioinformatics algorithms. CLC bio is an Apple solution provider and value added reseller.

CLC bio’s mission is to be among the most innovative bioinformatics companies in the 21st century. This is realized through:

  • Development of bioinformatics software and hardware based on the latest scientific findings
  • User-friendly, integrated and intuitive cross-platform software solutions
  • Continuous focus on customer needs and superior customer service
  • Frequent product updates including the latest IT technologies and bioinformatics algorithms
  • A flexible IT architecture, enabling customers to buy or develop individualized solutions at a reasonable price

Definiens Releases TissueMap 2.0 for Advanced Oncology Research

Munich, Germany – December 6th, 2007 – Definiens, the number one Enterprise Image Intelligence™ company, today unveiled the release of Definiens TissueMap 2.0, highlighting the company’s focus on oncology research. The image analysis software application is especially designed for the detailed, automated morphometric quantification of biomarkers of nuclei or cell bodies in epithelial tumors or xenografts. The application features the detection of viable and necrotic tissue in xenografts, as well as regions of IHC (DAB) positively stained nuclei or cells in the viable tissue. This enables pathologists to automate the process of complex or highly apoptotic xenograft analysis in oncology research.

Effective imaging technologies support pharmaceutical development in oncology

The discovery and application of oncology biomarkers have enhanced opportunities for individual disease treatment by identifying new drug targets. They therefore have a significant impact on the entire process of drug development including the emergence and growth of imaging technologies utilized to acquire accurate measurements of disease parameters.
The effective use of imaging technologies, such as Definiens TissueMap 2.0, significantly improves the selection and prioritization of quality candidates early in the drug development pipeline. This results in substantial cost savings and faster time-to-market as poorer drug candidates are removed early in the discovery process.

Assessment of any biomarkers targeting an antigen located in the nucleus or cell body

Definiens TissueMap 2.0 reliably identifies areas and structures of interest in image data allowing researchers to distinguish between viable and necrotic tumor areas and to quantify markers. It offers:

o Full tissue slide analysis

o Fast and reproducible results

o Platform independence and connectivity

o Easy customization

o Precise measurement of morphological parameters

Definiens TissueMap 2.0 encompasses the assessment of any biomarkers targeting an antigen located in the nucleus such as proliferation markers (Ki67, PCNA, BrdU, etc.), apoptosis markers such as Cap3 as well as estrogen or progesterone receptors. Antibodies or markers co-/located in the cell body, such as cytokeratines (CD31, AE1/3, etc.) and other proteins (CD45, CD23 or similar) can also be evaluated.

Comprehensive software for quantification regardless of staining methodology

Definiens TissueMap 2.0 enables the quantification of biomarker expression patterns in image data regardless of staining methodology. The software application effectively analyzes image data in oncology research, including cases involving poor staining technique and data obtained from heterogeneous equipment.

Definiens TissueMap 2.0 enables the automated detection of relevant morphological structure in tissue and tumor sections. It improves research results through increased data accuracy, consistency and reproducibility.

New information concerning Definiens TissueMap 2.0 was presented at the 7th World Drug Discovery & Development Summit 2007 in Cologne, Germany, December 4-5, 2007, which brought together leading pharmaceutical and biotech professionals to discuss key scientific and strategic challenges.

Definiens in Life Sciences

By automating image analysis on an enterprise level, Definiens supports Life Science organizations to analyze and interpret vast numbers of images accurately and consistently. Definiens improves the measurement of cell assays, the examination of tissue samples and the interpretation of non-invasive imaging, enabling high-content screening, digital pathology and translational medicine.

About Definiens

Definiens is the number one Enterprise Image Intelligence company for analyzing and interpreting images on every scale, from microscopic cell structures to satellite images. The Definiens Cognition Network Technology®, developed by Nobel laureate Prof. Gerd Binnig and his team, is an advanced and robust context-based technology designed to fulfill the image analysis requirements of the Life and Earth sciences markets. The technology is modeled on the powerful human cognitive perception processes to extract intelligence from images. Definiens provides organizations with faster image analysis results, allowing deeper insights enabling better business decisions. The company is headquartered in Munich, Germany and has offices throughout the United States. Further information is available at www.definiens.com.

Definiens, Definiens Cellenger, Definiens Cognition Network Technology, Definiens eCognition, Enterprise Image Intelligence and Understanding Images are trademarks or registered trademarks of Definiens.

CLC bio accelerates biomedical research with new RNA sequence analysis software

Aarhus, Denmark — December 14th, 2007 — CLC bio, the world’s leading bioinformatics solution provider, today announced the release of version 2.0 of CLC RNA Workbench. Among a wide variety of new features, this new release brings user-friendly versions of partition function calculation for RNA secondary structure and minimum energy free scanning – functions previously only available through highly advanced scripting, are now available through a graphical interface for everyone working with RNA research.

Peter Johannes Steffensen, PhD in Mathematics and algorithm expert at CLC bio, states,
‘We have developed our own minimum free energy algorithm and graphical interface to scan for local structure content – a world’s first! This feature is ideal for full genome scans of viruses, or for scanning mRNA for the presence of structural signals. For scientists working with RNA biology this is a very smooth and fast feature for computing significant local RNA structures based on minimum free energy calculation.

Dr. Roald Forsberg, Senior Scientific Officer at CLC bio, continues,
‘Today RNA biology is becoming important in all areas of biomedical research. We are now introducing a graphical interface to view different applications of partition function calculations for RNA secondary structure – another world’s first. With a few clicks of the mouse, scientists are now able to determine the probability for RNA structure elements like base pairs and unpaired regions. This is extremely useful for researchers who design molecules for RNA interference, and need to statistically test complex structure hypotheses.

By introducing a smooth and graphical approach to these functions, CLC bio helps accelerate viral biology research and reaffirms CLC RNA Workbench’s position in the market as the only integrated and professional solution which can help RNA researchers to a considerably more efficient workflow, and thereby save precious time in the research phases. Furthermore, researchers will get higher quality results, due to easy and user-friendly access to the cutting edge algorithms included in CLC RNA Workbench.

CLC bio offers a free 30-day trial of CLC RNA Workbench which can be downloaded from:
www.clcbio.com/rna

About CLC bio
CLC bio is the world’s leading full-service bioinformatics solution provider, solely focusing on the development of bioinformatics: software, hardware, data analysis, and custom-designed bioinformatics algorithms. CLC bio is an Apple solution provider and value added reseller.

CLC bio’s mission is to be among the most innovative bioinformatics companies in the 21st century. This is realized through:

Development of bioinformatics software and hardware based on the latest scientific findings
User-friendly, integrated and intuitive cross-platform software solutions
Continuous focus on customer needs and superior customer service
Frequent product updates including the latest IT technologies and bioinformatics algorithms
A flexible IT architecture, enabling customers to buy or develop individualized solutions at a reasonable price

CLC bio helps increase productivity with new integrable database solution

Aarhus, Denmark — November 29th, 2007 — CLC bio, the world’s leading bioinformatics solution provider, today announced the release of CLC Bioinformatics Database. This powerful and versatile database solution enables research organizations, from small university departments and clinical labs to large biotech and pharmaceutical companies, to maximize their potential, through increased productivity. An increase in productivity will help increase the number of drug candidates, by empowering scientists to do more with their research. In turn this gives companies a more efficient use of R&D budgets.

Dr. Darrol Baker, Sales Manager at CLC bio states,
CLC Bioinformatics Database raises the bar for what can be expected from a database solution! Our development team has focused on eliminating classic obstacles such as different operating systems, limited support for database formats, or limited access to a central storage facility. The security and management facilities in CLC bio’s Bioinformatics Database can potentially help organizations stop misuse or loss of data, as well as help protect their intellectual property rights.

For organizations already having an existing relational database in use for sharing DNA, RNA, and protein sequence data, the CLC Bioinformatics Database interface can be customized to store and retrieve data directly from that database. The result is a solution that enables all users of CLC bio’s software to work directly on – and fully integrated with – the organization’s existing database. This ensures the same data sharing, data searching and data security characteristics as if the database had been a stand alone database – except for the fact that the CLC bio data is now fully integrated with all other sequence data in the organization. The design, API-customization, implementation, and data migration can be carried out by the customer or by CLC bio’s consultants.

As with all other of CLC bio’s solutions, CLC Bioinformatics Database is cross-platform, running on Mac OS X, Windows, and Linux. Additionally, this solution will enable users across various workgroups to work on data in a central, shared, and secure relational database. CLC Bioinformatics Database integrates and runs smoothly with several types of databases, including Oracle, PostgreSQL, and MySQL.

For more information on CLC Bioinformatics Database, go to:
www.clcbio.com/database

About CLC bio

CLC bio is the world’s leading full-service bioinformatics solution provider, solely focusing on the development of bioinformatics: software, hardware, data analysis, and custom-designed bioinformatics algorithms. CLC bio is an Apple solution provider and value added reseller.

CLC bio’s mission is to be among the most innovative bioinformatics companies in the 21st century. This is realized through:

  • Development of bioinformatics software and hardware based on the latest scientific findings
  • User-friendly, integrated and intuitive cross-platform software solutions
  • Continuous focus on customer needs and superior customer service
  • Frequent product updates including the latest IT technologies and bioinformatics algorithms
  • A flexible IT architecture, enabling customers to buy or develop individualized solutions at a reasonable price

CLC bio customized software supports Abcam’s monoclonal development capability

Aarhus, Denmark and Cambridge, UK — November 6, 2007 — CLC bio, the premier bioinformatics solution provider, and Abcam, the world-leading research antibody supplier, today announced that CLC bio has met the first important milestone of the two companies’ collaboration: the development of a customized epitope prediction software solution to augment  Abcam’s high through-put monoclonal antibody development programme.

Through automation of labor intensive manual workflows and by applying expert scientific knowledge, CLC bio’s customized bioinformatics solution ensures a significant reduction in the time-to-marketwhilst ensuring that the antibodies are of the highest quality.

Dr Catherine Onley, Head of Product Development & Manufacture at Abcam, states:
‘We searched the market to find the best bioinformatics solution provider for this highly specialized project and I am more than satisfied with CLC bio’s performance. Their skilled IT developers and experienced bioinformatics scientists and project manager have developed an epitope prediction solution that exceeds our expectations. Abcam’s in-house R&D programme will benefit significantly from this. I look forward to the next phase of our collaboration, where we will fully integrate the epitope prediction solution with our LIMS system.’

Dr Jannick D. Bendtsen, project manager and Senior Scientific Officer at CLC bio, said:
‘We are very proud to help Abcam improve their R&D workflows and performance through this software consulting assignment. From a personal perspective, I’m thrilled to work on this Abcam project as it has been scientifically challenging. I look forward to seeing Abcam improve their competitive edge using this new bioinformatics solution.’

Parts of the epitope prediction functionalities will be included in future versions of CLC Protein Workbench and CLC Combined Workbench, which will facilitate epitope prediction in basic research. The unique Abcam-related work will be kept confidential between the two parties.  The customized epitope prediction software follows CLC bio’s concept of providing highly specialized bioinformatics solutions, based on a highly popular and well-proven platform. The Abcam solution is designed as a plug-in that is then fully integrated with the CLC Combined Workbench, CLC bio’s premier desktop-based DNA, RNA, and protein sequence analysis and data management software.

Read more about CLC bio’s customized software solutions on:
www.clcbioconsulting.com

About CLC bio
CLC bio is the world’s leading full-service bioinformatics solution provider, solely focusing on the development of bioinformatics: software, hardware, data analysis, and custom-designed bioinformatics algorithms. CLC bio is an Apple solution provider and value added reseller.

CLC bio’s mission is to be among the most innovative bioinformatics companies in the 21st century. This is realized through:

Development of bioinformatics software and hardware based on the latest scientific findings
User-friendly, integrated and intuitive cross-platform software solutions
Continuous focus on customer needs and superior customer service
Frequent product updates including the latest IT technologies and bioinformatics algorithms
A flexible IT architecture, enabling customers to buy or develop individualized solutions at a reasonable price
About Abcam, Plc
Abcam plc is a producer and distributor of research-grade antibodies headquartered in Cambridge, UK, with a US office located in Cambridge, Massachusetts, and a Japan office in Tokyo. Abcam was admitted to AIM in November 2005 and trades under the ticker symbol ABC.  The Company produces and distributes its own and third party produced antibodies to academic and commercial customers throughout the world with product information provided and ordering available through the Company’s website, www.abcam.com. The antibodies are sold under the Abcam brand name. The Company’s vision is to build the largest online antibody resource in the world while also ensuring that the antibodies are of high quality and commercially viable. Abcam now has an online catalogue of approximately 35,000 products, most of which are antibodies, from over 200 suppliers supported by up-to-date and detailed technical data sheets, which are created by the Company. The Company currently employs 130 staff in its three operating companies.