Archive for the ‘HIV Research’ Category
AIDS Drugs – HIV
Last Updated on Monday, 14 December 2009 05:19 Written by Editor Monday, 14 December 2009 05:19
In the early 1980s, the human immunodeficiency virus (HIV) was identiÂfied as the etiologic agent of acquired immune deficiency syndrome (AIDS). More than 3 million people worldwide died from HIV/AIDS in 2003, according to a July 2004 United Nations report. During the same period, about 5 million people contracted the human immunodeficiency virus, bringing the total number of people living with HIV worldwide to 38 million. Although AIDS was called the «gay men’s disease» at the beÂginning of the outbreak, it was soon discovered that sexual intercourse was not the only way of transmission. Blood transfusions and mother-to-baby transmission also spread the virus.
In comparison to the scourges caused by other viruses in history, we were more prepared and have achieved astonishing milestones against AIDS, thanks to our accumulated knowledge and efforts around the globe. HIV was identified and shown to be the cause of AIDS in less than 2% years. It took only another 2 years for blood tests to become commercially available. In 1987, the first anti-HIV drug, AZT, was introduced. With the arrival of the HIV protease inhibitors and triple drug therapy (the cocktail therapy) in 1995, many patients who would otherwise have died are still alive. In 1996, Time magazine named AIDS researcher David Ho «Man of the Year» for his revolutionary idea of the cocktail therapy.
Who discovered HIV was such a contentious isÂsue that it took the President of the United States and the Premier of France to settle the dispute.
In 1983 Francoise Barre-Sinoussi and Luc Montagnier, in the laboratory led by Montagnier at the Institut Pasteur de Paris, first detected and later isoÂlated a retrovirus, lymphadenopathy-associated virus (LAV), which they believed was the cause of AIDS. During their research on the virus, Montagnier’s labÂoratory collaborated with Robert C. Gallo, a renowned virologist at the National Cancer Institute (NCI), who was one of the most widely referenced scientists in the world in the 1980s and 1990s. Montagnier and Gallo frequently exchanged virus sampies and information. In April 1984, Gallo held a press conference anÂnouncing that his laboratory had isolated a retrovirus, human T-lym-photrophic virus (HTLV-III), that he believed to be the cause of AIDS. Gallo was basking in scientific glory and was widely considered a leading contender for the Nobel Prize. Soon it was confirmed that Gallo’s HTLV-III and Montagnier’s LAV were identical. In 1986, a nomenclature comÂmittee was set up, chaired by Harold Varmus, an expert in avian retrovirus and then director of the NIH. The NIH committee settled on the name of human immunodeficiency virus (HIV).
In April 1984, Gallo’s laboratory filed a patent on an HIV blood test kit using his HTLV-IIIB-ELISA (enzyme-linked immunosorbent assay), which was issued in a record 13 months via a special category involving naÂtional security. Although Institut Pasteur had filed a patent in the United States much earlier, in December 1983, it was not granted until a later date. Gallo’s HIV test kit was approved by the FDA in 1985. An acrimonious leÂgal battle ensued for the priority of the discovery of the HIV between the French and American teams. The contentious scientific and legal controÂversies came to an end in March 1987 when a historic agreement was signed by the directors of the NIH and the Institut Pasteur and ratified by Ronald Reagan and Jacques Chirac. The patents would become the joint properties of the two institutions, which would share the royalties. The three inventors from the NIH, including Gallo, would receive $100,000 annually from the royalties earned.
Even the intervention by two heads of state did not put the matter to rest. In November 1989, a Pulitzer Prize-winning investigative reporter, John Crewdson, published a 50,000-word article in the Chicago Tribune on the Montagnier-Gallo priority dispute. He concluded that Gallo had either stolen or allowed his samples to be contaminated with Montagnier’s virus. The controversy generated resulted in congressional investigations. In the end, it was found that Mikulas (Mika) Popovic from CzechoslovakÂia, a cell biologist in Gallo’s laboratory, had isolated HTLV-III from a pool by mixing several blood samples from different sources, including Montagnier’s sample, which contained LAV. Pooling blood samples was an unusual practice in virology. In 1991, Gallo admitted in Nature that he had not discovered the new virus. In 1996, he left the NCI, where he had worked for 30 years, to become the director of the Institute of HuÂman Virology at the University of Maryland Biotechnology Institute in Baltimore.
In 1987, the first anti-AIDS drug, AZT, was introduced by Burroughs Wellcome. AZT, which blocks HIV reverse transcriptase activity, stands for azidothymidine, with the generic name of zidovudine and the trade name of Retrovir. Popular media often give the credit to Gertrude Elion of Burroughs Wellcome for having discovered AZT. In fact, alÂthough Elion and George Hitchings (see chapter 1, page 19) developed the concept of using nucleotides as antimetabolites in treating cancers, AZT itself was synthesized by a group led by Jerome Horowitz of the Detroit Institute of Cancer Research in 1964 as a possible anticancer drug. Horowitz, now a professor at Wayne State University, published his synÂthesis as a note in the. Journal of Organic Chemistry in 1964.
Since its birth, AZT had a checkered life as a drug looking for a disease to treat. AZT did not show efficacy in treating cancers; the drug also failed to prolong the lives of leukemic animals. In 1974, a German laboratory found it effective against viral infection in mice—Wolfram Ostertag of the Max Planck Institute for Experimental Medicine showed that leukemia helper virus (LLV-F) replication by AZT occurred via phosphorylation of AZT to the corresponding triphosphate, which cannot be incorporated into the growing strand of DNA. Ostertag correctly concluded that AZT-triphosphate worked by binding to the growing strand of DNA. BurÂroughs Wellcome acquired AZT and explored the possibility of using it to treat the herpes virus under the guidance of Gertrude Elion, although it did not make it to the market.
In 1984, shortly after Gallo announced his discovery of the retrovirus, HTLV-III, the head of the NCI, Samuel Broder, organized a team to screen antiviral agents as possible treatments for AIDS. In all, more than 50 pharmaceutical companies submitted their possible antiviral drug canÂdidates to Broder’s team for screening. Together with Dani Bolognesi, an AIDS researcher at Duke University, Broder obtained some of the potenÂtial antiviral compounds from Burroughs Wellcome. In February 1985, usÂing an assay developed by Hiroaki «Mitch» Mitsuya, AZT was found to be active in vitro in the NCI laboratories in Bethesda. Wellcome patented AZT as an antiviral drug in June 1985 and promptly commenced the cliniÂcal trials. As with cancer drugs, the Phase I trials for AIDS drugs are done with patients rather than with healthy volunteers. The first trials to test AZT in patients with HIV showed dramatic efficacy. For ethical reasons, the company terminated the trials and switched patients on placebo to AZT immediately. The FDA approved the use of AZT on March 19,1987, within 22 weeks. The recommended dose was one 100-mg capsule every 4 hours around the clock. Thus AZT established itself as the first antiviral drug in the arsenal against HIV. The mechanism of action of AZT is the blockade of the HIV reverse transcriptase activity. Reverse transcriptase, first isolated by David Baltimore and Howard Termin in 1970, is the enÂzyme that transcribes RNA into DNA. The success of AZT incited the deÂvelopment of many nucleotide anti-HIV drugs in an effort to minimize the toxicities that AZT displayed.
Among the newer reverse transcriptase inhibitors, Ziagen represents a vast improvement over AZT, a nucleotide whose gycosidic core structure is metabolized rapidly. Whereas AZT has to be taken every 4 hours around the clock, Ziagen allows a twice-daily regimen. When the oxygen on AZT is replaced with a methylene group, carbocyclic nucleoside analogs such as Ziagen are metabolized much more slowly by the body. Ziagen was develÂoped by Glaxo Wellcome (now part of GlaxoSmithKline) using a technolÂogy developed by Robert Vince of the University of Minnesota, who licensed the patent to Glaxo Wellcome in 1993.
Robert Vince is a professor of medicinal chemistry and director of the Center for Drug Design at the University of Minnesota. After completing his Ph.D. training in 1966, he began his independent research in the field of antiviral medicine. In the mid-1970s, he designed an antiviral comÂpound, carbocyclic Ara-A (cyclaradine), that was more effective in comÂbating herpes virus than acyclovir was. Because he did not patent his discovery, it was difficult to entice the pharmaceutical industry to develop it. That experience taught him a lesson on the importance of intellectual properties. In the mid-1980s, inspired by the success of AZT, Vince started to tinker with nucleosides as HIV reverse transcriptase inhibitors. In retrospect, it was logical for him to replace the oxygen on the nucleoÂsides related to AZT with a methylene group in order to improve bioavail-ability. But at that time, it represented a significant improvement. Along with a visiting researcher from China, Mei Hua, he synthesized a group of carbocyclic nucleoside analogs, which they called carbovirs. The NIH tested the carbovirs and found them to be the most active compounds in their screen against HIV since AZT. In fact, the carbovirs were the first compounds found active against HIV that were specifically synthesized for that purpose. In 1987, the University of Minnesota patented their synthesis and a group of antiviral drugs, listing Vince and Hua as coin-ventors. The university subsequently licensed the patent to Glaxo Well-come, which arrived at Ziagen by substituting a propyl cyclopropyl group for the purine ring using the synthetic route developed by Vince. Because of Ziagen’s favorable pharmacokinetics profile, it allows a twice-daily regÂimen and has brought in hundreds of millions of dollars in sales for the company.
The credit for any important discovery often seems to be a contentious issue. In this case, the stakes were high, as both AIDS and a large sum of money were involved. Glaxo claimed that Ziagen was not covered by the Vince-Hua patent because the patent did not cover Ziagen per se, whereas Minnesota contested that alkyl surely included cyclopropyl. In October 1999, the University of Minnesota and Glaxo settled this dispute, and as part of the settlement Glaxo agreed that the University patents were valid and enforceable. The settlement brought a financial windfall for MinÂnesota and the inventors. With the Ziagen money, estimated at $250 milÂlion thus far, Minnesota established a Center for Drug Design, with Vince as its director. Vince is putting his share of the Ziagen money to work on potential new AIDS drugs and other potential antiviral and anticancer agents at the center.
In addition to AZT and Ziagen, many HIV reverse transcriptase inÂhibitors exist. An organic chemistry professor at Emory University, Dennis Liotta, and his virologist colleague, Raymond Schinazi, discovered another reverse transcriptase inhibitor 3TC (lamivudine, Epivir), which allows a once-daily regimen. BMS’s d4T was licensed from Yale University. The drug gained international fame when activists at Yale persuaded the uniÂversity to rewrite a license agreement with BMS so that generic d4T could be sold in South Africa. BMS’s ddl was approved in mid-1991, and nevi-rapine (trade name Viramune) by Boehringer Ingelheim was approved by the FDA in June 1996.
Posted under HIV Research, New Drugs, Press Releases | No Comments
Trana Discovery and Southern Research Institute Find Bioactive HIV Antiviral Compounds: NIAID contracts additional $700,000 to screen 300,000 more compounds for HIV inhibition
Last Updated on Wednesday, 2 December 2009 01:50 Written by Editor Wednesday, 2 December 2009 01:50
Trana Discovery and Southern Research Institute Find Bioactive HIV Antiviral Compounds: NIAID contracts additional $700,000 to screen 300,000 more compounds for HIV inhibition
PRNewswire – October 28, 2009
CARY, N.C. and BIRMINGHAM, Ala., Oct. 28 /PRNewswire-USNewswire/ — Trana Discovery, Inc., an infectious disease drug discovery technology company, and Southern Research Institute, a not-for-profit contract research organization conducting basic and applied preclinical drug research, today announced that several bioactive hits from a set of 15,000 diverse small molecule compounds screened under contract with the National Institute of Allergy and Infectious Diseases (NIAID) exhibit antiviral activity against HIV-1 infected cells. Among the compounds tested at Southern Research using the Trana HIV 201 High-Throughput Screening (HTS) assay, 16 compounds demonstrated inhibition of HIV replication in infected human cells and several of these compounds were judged to be “potentially druggable.”
The screening assay used to identify the compounds is based on the premise that HIV-1 has evolved to use tRNALys3 as a primer for initiation of reverse transcription. Therefore, the interaction between tRNALys3 and viral genomic RNA represents a potential novel target for HIV-1 drug development. The biochemical assay to identify inhibitors of the interaction between tRNALys3 and HIV-1 genomic RNA was developed by Trana and transferred to Southern Research for high-throughput screening. Southern Research converted the assay to a homogeneous amplified luminescent proximity assay using AlphaScreen(R) reagents from PerkinElmer.
During this initial pilot study, 164 compounds were identified from the diversity set library as hits. Of these hits, 136 were retested in dose-response against HIV-1IIIB replication in a CEM-SS cytoprotection assay. Sixteen of this last group of compounds inhibited HIV-1 replication.
“These data indicate that the TRANA Discovery assay has identified a number of compounds with modest antiviral activity against HIV-1,” said Roger Ptak, Co-Principal Investigator, Southern Research Institute, in his report to the Division of Acquired Immunodeficiency Syndrome (DAIDS) within NIAID. “Additional testing of compounds with similar structures, as well as broader HTS, should lead to the identification of lead compounds that inhibit HIV-1 replication through the novel mechanism of inhibiting the interaction between tRNALys3 and viral genomic RNA.”
As a result of this successful pilot study, DAIDS has approved $700,000 of additional funding for the contract with Southern Research Institute in order to screen an additional 300,000 compounds and to conduct confirmatory testing of selected lead compounds. Lead candidates (or analogs) identified through this screening will be pursued by Trana Discovery for development and to secure the property rights and patents as deemed appropriate.
Toward that end, Trana Discovery is seeking organizations interested in licensing identified leads or that hold diverse collections of compounds or compounds with known bioactivity against HIV but unknown mechanism of action to identify candidates for drug development.
The use of high-throughput screening (HTS) assays developed by Trana Discovery can provide licensing opportunities for exclusive rights to new drug classes and reduce the cost and time for drug discovery.
“We are excited about the results from the initial screening efforts and for the confidence exhibited by the NIAID/DAIDS by this additional funding commitment,” said Steve Peterson, CEO of Trana Discovery. “We remain very optimistic that the use of our HIV assay will lead to new antivirals for the treatment of this disease.”
NIAID conducts and supports research to study the causes of infectious and immune-mediated diseases, and to develop better means of preventing, diagnosing and treating these illnesses. The NIAID is a component of the National Institutes of Health (NIH), the primary federal agency for conducting and supporting basic, clinical and translational medical research. Work for this project was performed under the DAIDS, NIAID contract N01-AI-70042; Roger Miller, Project Officer.
The HTS screening was conducted at the Southern Research High-Throughput Screening Center which consists of a suite of laboratories designed for efficient screening of large compound libraries and has the capacity for screening a wide variety of assay types. The Trana Discovery assay was recently validated in a 1536 well format, which increases the screening capabilities to over 100,000 compounds per day.
Organizations interested in licensing the Trana HIV 201 assay should contact Trana at info@tranadiscovery.com or by calling 866-390-3452 (toll free) or +1-919-342-6192. Parties interested in screening compounds using this assay at Southern Research Institute facilities may contact David Harris at d.harris@southernresearch.org or call +1-800-967-6774.
About Trana Discovery, Inc.
Trana Discovery, an anti-infective drug discovery technology company, helps its partners find new classes of drugs for the treatment of serious bacterial, viral, and fungal infectious diseases. Our proprietary assays identify compounds that work through a unique mechanism of action: inhibition of the target pathogen’s ability to use transfer RNA (tRNA) essential for propagation. The use of high-throughput screening assays developed by Trana Discovery will reduce the cost and time for drug discovery. Our assays provide licensing opportunities for exclusive rights to new drug classes. Trana Discovery has licensed the patented technology emanating from 20 years of research conducted at North Carolina State University, and holds patents that expand on this core technology and its use in high throughput screening. The company is located in Cary, North Carolina. For more information, please visit www.tranadiscovery.com.
About Southern Research Institute
Southern Research Institute is a nonprofit 501(c)3 scientific research organization that conducts preclinical drug discovery and development, and advanced engineering research in materials, systems development, environment and energy. Our more than 550 scientific and engineering team members support clients and partners in the pharmaceutical, biotechnology, defense, aerospace, environmental and energy industries. Southern Research is headquartered in Birmingham, Ala., with facilities in Wilsonville, Ala., Anniston, Ala., Frederick, Md., and Durham, NC and offices in New Orleans, La., Washington, DC and Kiev, Ukraine. For more information about Southern Research and its capabilities and accomplishments, visit www.SouthernResearch.org.
*Bilbille Y, et al. Vendeix Nucleic Acids Res. 2009 Jun;37(10):3342-53. Epub 2009 Mar 26. See www.tranadiscovery.com for complete reference.
Source: Southern Research Institute
Posted under Grants and Awards, HIV Research, Press Releases | No Comments
Researchers find candidates for new HIV drugs
Last Updated on Tuesday, 1 December 2009 11:26 Written by Editor Tuesday, 1 December 2009 11:26
While studying an HIV protein that plays an essential role in AIDS progression, researchers at the University of Pittsburgh School of Medicine have discovered compounds that show promise as novel treatments for the disease.
HIV drug discovery efforts have met with little success in finding compounds that interact with an important HIV virulence factor, called Nef, because it lacks biochemical activity that can be directly measured, explained Thomas E. Smithgall, Ph.D., William S. McEllroy Professor and Chair, Department of Microbiology and Molecular Genetics, and senior author of the paper, which was published last week in the early, online version of ACS Chemical Biology.
To get around that problem, Dr. Smithgall’s team developed an assay to measure Nef function indirectly by coupling it to another protein, called Hck, which Nef activates in HIV-infected cells. Because Hck activity can be easily measured, the investigators were able to use it as a reporter for Nef activity in an automated high-throughput screening process. In collaboration with the University of Pittsburgh Drug Discovery Institute, they screened a library of 10,000 chemical compounds against the coupled proteins to see which ones influenced Nef-induced activation of Hck.
After further testing, they confirmed that three compounds inhibited the activity of the Nef-Hck complex and, more importantly, all of them also interfered with HIV replication. One compound was so effective that it suppressed HIV replication to undetectable levels in cell culture experiments.
“So we now have a way to rapidly and efficiently screen for inhibitors of Nef signaling through Hck,” Dr. Smithgall said. “But the surprise was that some of those inhibitors also showed strong antiviral activity in cell culture models.”
There is evidence that people infected with HIV variants that have mutations in the Nef gene take substantially longer to develop disease symptoms or AIDS, he said. In animal models, disrupting the production of Nef from the virus or its interaction with Hck also delays or prevents disease symptoms. The next challenge for the researchers will be to determine whether these compounds also interfere with progression of AIDS-like disease in animal models by blocking Nef function.
“Most current therapies for HIV infection use drugs that interfere with the function of viral enzymes such as reverse transcriptase or with the interaction of the virus and the host cell,” Dr. Smithgall said. “Targeting Nef represents an entirely new approach that could be useful to deal with issues such as drug-resistant HIV strains, and may slow the progression to AIDS.”
He added that Nef is just one of several so-called “accessory proteins” encoded by HIV which are important virulence factors in AIDS. Inhibitory compounds against some of the others might be revealed using a similar coupled protein approach for high throughput screening.
Source: labspaces.net
Progress in Finding a New Class of HIV Drugs
Last Updated on Tuesday, 1 December 2009 11:22 Written by Editor Tuesday, 1 December 2009 11:22
Scientists have discovered a method for screening an entirely new class of drugs, targeted against the HIV protein Nef, according to an article published online October 6 in ACS Chemical Biology and reported by ScienceDaily.
HIV’s Nef protein has an important indirect influence on how well HIV functions in the body. The presence of Nef inhibits HIV-infected cells from signaling to other cells that they are infected. This means that other immune system cells responsible for seeking out and destroying diseased or damaged cells aren’t able to respond effectively, thus allowing HIV-infected cells to continue producing new virus. Nef also activates uninfected CD4 cells nearby, increasing the likelihood that they too will become infected.
Researchers learned long ago that people infected with a strain of HIV containing a disabled form of Nef typically have much slower disease progression than people infected with Nef-functional HIV. Unfortunately, the protein is very difficult to study, as its effects don’t show up well in test tube studies.
Now, however, Lori Emert-Sedlak, PhD, from the University of Pittsburgh School of Medicine, along with department chair Thomas Smithgall, PhD, and other colleagues, has found a way to measure the effect of drugs on Nef. They’ve done so by looking at a cellular protein that Nef partners with, called Hck, to perform vital functions. Emert-Sedlak and her team developed an automated screening tool to test the effect of various chemical compounds on Hck, and thus presumably on Nef as well.
After screening 10,000 compounds, they found three that appear not only to disable Nef, but also to have a measurable effect on HIV replication. One, in particular, was able to completely stop all HIV replication in test tubes.
“We now have a way to rapidly and efficiently screen for inhibitors of Nef signaling through Hck,†Smithgall said. “But the surprise was that some of those inhibitors also showed strong antiviral activity in cell culture models.â€
As with all early discoveries, the team’s method will have to be validated, and promising compounds will have to be studied in animals to determine whether they function as desired and are safe.
Source: aidsmeds.com
Posted under Drug Development, HIV Research, Press Releases | No Comments
AIDS Study Flushes Out Hidden Virus, Pointing to Possible Cure
Last Updated on Wednesday, 14 October 2009 10:02 Written by Editor Wednesday, 14 October 2009 10:02
Oct. 2 (Bloomberg) — Scientists, moving closer to a cure for AIDS, identified a way to find medicines that would help rid patients of the hardest-to-treat pockets of HIV.
Current anti-HIV drugs reduce the virus to undetectable levels without eradicating it. The virus survives by lying dormant in immune-system cells, where the medicines don’t reach them. Scientists from Johns Hopkins University and the Howard Hughes Medical Institute reported yesterday that they developed a way of luring out these cells in laboratory experiments, an achievement they said may lead to a cure if repeated in humans.
In 2007, about 2.7 million people were newly infected with HIV, the virus that causes AIDS, and 2 million died of the disease, making it the world’s deadliest infectious malady, according to the Geneva-based World Health Organization, an arm of the United Nations. Scientists looking to stop HIV have turned to attacking so-called latent reservoirs of the virus after efforts to prevent infection, such as vaccines and gels, largely failed.
“This is a way in which you could envision finding a drug that would, in conjunction with existing treatment, allow us to cure patients,†said Robert Siliciano, the professor who led the study at Johns Hopkins’s medical school in Baltimore. More research is needed, he said.
For about 12 years, doctors have known that HIV, or human immunodeficiency virus, can lie dormant in immune-system cells called resting CD4s found in the lymph nodes, spleen and blood. There the virus stops replicating, avoiding the drugs designed to kill it.
Roaring Back
Studies have shown latent HIV comes roaring back when treatment is interrupted, condemning patients to a lifetime on drugs such as Abbott Laboratories’ Kaletra that can cause side effects including nausea, liver damage and fat buildup. Eliminating the last vestiges of the virus could cure patients of the disease, allowing them to stop treatment.
Siliciano’s team mimicked HIV latency in a lab dish using a gene called Bcl-2 to turn normal CD4s into resting cells capable of hosting the dormant form of HIV.
The researchers used the model to test 2,400 chemicals, finding 17 that coaxed the virus out of hiding, kick-starting its normal process of replication. In a human, that would make the virus susceptible to drugs. The best performer was a compound called 5HN found in the leaves, bark and roots of the black walnut tree.
‘Key Thing’
“They’ve found a way to find drugs — that’s the key thing,†said Stephen Kent, a professor of immunology at the University of Melbourne, in a telephone interview yesterday. “We’ve really just been guessing up to this point about ways to get at this. Having a system for screening drugs is a big advance over what we’ve had so far.â€
The result was achieved without rousing non-infected CD4 cells, avoiding a potentially fatal scenario called a cytokine storm in which the body’s immune system overreacts.
The study has limitations, Siliciano said. First, 5HN may be too toxic for use in humans, he said by phone.
“It’s going to require additional research to find something that does the same thing but doesn’t have lots of other effects,†Siliciano said. “We’re pretty confident that we’ll find lots of compounds that work, but whether any of those will be sufficiently free of other effects — that’s not clear,†he said.
Second, recent studies have pointed to another reservoir of latent HIV that has yet to be identified, Siliciano said.
No Test
“We may have to find another drug to target that reservoir,†he said. “First we have to identify what it is.â€
There’s no test for identifying whether a patient has latent HIV, meaning the only way to be sure a drug has polished off the virus is to cease treatment and see if it returns, the University of Melbourne’s Kent said.
The findings are an advance that may allow researchers to come up with a drug they could start testing in humans, Kent said.
“To get something like that into clinical trials is only a few short years — it’s not decades,†he said. “Then it’s got to work.â€
The study was published yesterday in the Journal of Clinical Investigation, a peer-reviewed journal published by the American Society for Clinical Investigation, of Ann Arbor, Michigan.
The research was funded by the National Institutes of Health in Bethesda, Maryland; the Doris Duke Charitable Foundation in New York; and the Howard Hughes Medical Institute in Chevy Chase, Maryland.
To contact the reporter on this story: Simeon Bennett in Singapore at sbennett9@bloomberg.net
Source: bloomberg.com
Posted under Discoveries, Innovations and Patents, HIV Research, New Drugs, Press Releases | No Comments
Virtual Screening Gives Drug Design a Boost
Last Updated on Wednesday, 19 November 2008 05:07 Written by Editor Wednesday, 19 November 2008 05:07
San Diego, CA (OBBeC) – Researchers at the University of California, San Diego, developed a unique computational approach to identify key compounds that could lead to new drugs to combat African sleeping sickness — a disease spread by the biting tsetse fly and caused by the parasite Trypanosoma brucei.
The approach developed by McCammon’s group uses a combination of several computational tools. It starts with a detailed model of the biological target –REL1 in this case — derived from X-ray crystallography. It then uses biophysical principles to find all the ways in which the protein can twist, turn, and wiggle.
McCammon’s computational method has already proven its utility for designing other important drugs. His group used it to develop a model for a new class of drugs to treat AIDS that led to raltegravir, which the Food and Drug Administration approved in 2007. McCammon’s team also used the method to identify promising drug candidates for treating H5N1 avian flu.
Seegene/Lab901 brings a New Detection Platform for Multiple Pathogens to European Hospitals
Last Updated on Friday, 18 July 2008 06:41 Written by admin Friday, 18 July 2008 06:41
Rockville, MD, and Edinburgh, Scotland, June 17, 2008:Â Seegene and Lab901 today announced the availability of a novel automated multi-pathogen walk-away detection platform for European hospitals. Based on the Seeplex(R) multiplexing PCR system and ScreenTape(R)Â gel electrophoresis detection system, this new Seeplex/ScreenTape detection platform will be introduced to clinical and research laboratories in 10 countries across Europe beginning this month.
Seegene and Lab901 have agreed to co-market the testing solutions in the European market. The two companies are responding to requests in Europe for a new automated testing technique to perform what is a routine, but not always consistent, test for biological agents in clinics. Hospital centers in The Netherlands, United Kingdom, Spain, Italy, Norway, Greece, Austria, France, Israel and Turkey have started demonstrations of the automated Seeplex/ScreenTape system.
“As active pathogenic surveillance becomes the norm for healthcare regimes worldwide, clinical research and reference labs will be placed under increased pressure to perform. It is essential that these labs gain the tools and systems that enable them to increase the speed and efficiency of pathogen detection,” said Dr. Jong-Yoon Chun, Founder and Chief Executive Officer, Seegene. “The automated Seeplex/ScreenTape system sets a new standard for automated detection ease of use and performance.”Â
“The simplicity, speed and sample traceability of the Seeplex/ScreenTape system is clearly of real value to diagnostic microbiology and virology laboratories,” said Joel Fearnley, Co-founder and Chief Executive Officer of Lab901. “The ScreenTape system optimized for Seeplex multi-pathogen tests will help speed up discovery and diagnostic procedures.”
The automated Seeplex/ScreenTape tests are based on a Seeplex multiplexing PCR technology from Seegene, which is capable of detecting multiple pathogens in a single tube, and ScreenTape(R), an automated walk-away gel electrophoresis detection system from Lab901.
The Seeplex tests with the CE mark and ISO 13485 deliver maximum specificity, reproducibility and sensitivity and can be applied to a broad range of molecular diagnostics, including human, animal, plant and microorganisms. The ScreenTape system will automate the simultaneous analysis of eight or sixteen Seeplex PCR samples. Processing speed for 8 samples is completed within 10 minutes; 16 samples within 18 minutes. ScreenTape displays results using an easy to interpret positive and negative read out. With no gel or buffer preparation and no system priming, even untrained operators can rapidly generate accurate and reproducible test data.
The automated Seeplex/ScreenTape tests are currently available for sexually transmitted diseases (STD), human papillomavirus (HPV), respiratory viruses (RV) and bacterial pneumonia (PB). In addition, further automated Seeplex tests are under development and will be available soon. Particularly, hospitals have showed high interest for the single tube Seeplex Sepsis test scheduled for July release.
About Seegene:
Seegene, Inc. is pioneering the field of multi-pathogen testing. Seegene applies its novel and proprietary Seeplex(R) system utilizing “DPO (Dual Priming Oligo)” and “ACP (Annealing Control Primer)” to create multi-pathogen tests delivering maximum specificity, reproducibility and sensitivity. With over 260 citations and several patents and patents pending, Seegene has been offering advanced molecular diagnostics services to over 1,000 major global institutes in more than 25 countries. Seegene’s mission is to integrate Seeplex(R) with disease diagnostics to provide a new guideline for effectively treating patients. Seegene was founded in 2000 and is based in Rockville, MD and Seoul, Korea. For more information please visit www.seegene.com.
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About the Seeplex(R) System: Frontier of Multi-pathogen Detection:
Seeplex(R) is a breakthrough multiplexing PCR technology that enables a new standard in simultaneous multi-pathogen detection. Seeplex(R) works in combination with automatic detection systems such as ScreenTape(R) and delivers a benchmark in testing accuracy, efficiency and cost-effectiveness.
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About Lab901:
Lab901 based in Edinburgh, UK, is a leading laboratory automation Company. The D800 ScreenTape(R) for DNA analysis was the first product from a pipeline of consumables that run on the company’s TapeStation(TM) instrument. The new DS12 ScreenTape(R) System, specifically developed for Seeplex(R) tests, automates the analysis of Seegene’s multi-pathogen PCR tests.
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About ScreenTape(R) System:
The ScreenTape(R) system is the first automated, walk-away solution for gel electrophoresis. Customers simply load their samples and the ScreenTape(R) into the compact TapeStation(TM) instrument. In just under 10 minutes, fully analysed results for DNA, RNA and protein samples are presented in an easy-to-interpret format.
Posted under Clinical Trials, Collaborations, Europe, HIV Research, New Products, North America, Press Releases | No Comments
Validated biomarkers will drive personalized medicine
Last Updated on Wednesday, 30 April 2008 07:12 Written by admin Wednesday, 30 April 2008 07:12
Biomarkers will be accepted as predicted tools, but their clinical usefulness needs to be understood
first, according to personalized medicine expert.
Coordinating personalized medicine on an international level, Dr Edward Abrahams, Executive
Director of the Personalized Medicine Coalition believes that biomarkers will eventually impact all
disease areas.
“When they were validated, and when it can be understood how clinically useful they are, biomarkers will be the easier method to understand the etiology of disease and human wellness,†commented Abrahams.
While the science of personalized medicine is fairly new, it is already being demonstrated in successful approaches to treating breast cancer and HIV. In cancer research in particular, industry is realising the potential of a separate diagnostic readout for every patient to allow for more targeted therapeutics. Abrahams sees biomarkers as “the scalpel that opens the patient,†but despite current success there are also serious issues for the uptake of personalized medicine, such as barriers to market.
The Personalized Medicine Coalition has been set-up to deal with such barriers in all levels of
research across the various industries involved. Evolving business models, demonstrating clinical
utility, and improving training at the bedside are just a few of the barriers that have affected “a clear regulatory pathway to co-develop personalized products,” commented Abrahams.
Despite warning of the serious issue of probability when using biomarkers as predictive tools, Abraham’s view of the future is bright: “I and many foresee a day when we’ll have predictive
biomarkers across all of healthcare.†With successful validation and clinical usefulness, advancing the use of biomarkers in industry will be a key stepping stone towards a personalized approach and the success of the healthcare system in the future.
Reducing healthcare costs will be a vital step to ensuring an effective system is in place for our aging populations; “personalized targeted therapies†may be one way to improve outcomes, with products tailored to each patient group. Highlighting this is one of the goals of the Personalized Medicine Coalition.
“Even if the individual products might cost more money, the system might save money by getting the approach right the first time.â€
Hear more from Dr Edward Abrahams during his plenary lecture at the upcoming Informa Life
Sciences’ conference on ‘Advancing Biomarkers for Industry.’ Running alongside a Molecular
Diagnostics meeting, this takes place on 24-25 June 2008 in Brussels, Belgium. Find out more at
www.informa-ls.com/biomarkers
Posted under Cancer Research, HIV Research, Press Releases | No Comments
Health Care’s Silent Spring
Last Updated on Wednesday, 9 April 2008 11:50 Written by admin Wednesday, 9 April 2008 11:50
As the Intergovernmental Working Group (IGWG) of the WHO prepares to meet and discuss how to best facilitate the expropriation of intellectual property rights (in this case the IPR of pharmaceutical patents) it’s important to consider the unintended consequences — the death of medical innovation.
The global purloiners of patents — led by Jamie Love — are thrilled to point out all of the new and important medicines that are the low hanging fruit of their property theft proposals — but are far less keen to explain how the fruit tree got there in the first place — or how they are nurtured.
In India, political leaders long cited former Prime Minister Indira Ghandi’s call for an end to “profiteering from life or death†in defense of their prohibition of patents on medicine. But in 2005, India reversed course and re-established patent protection for pharmaceutical products. The reason? Less than 10 percent of the nation’s estimated 3.5 million AIDS patients were receiving any medicine at all.
In other words, the elimination of patent rights doesn’t produce greater access to medicines.
There is a reason why virtually all the world’s “miracle drugs†have been developed in Western countries. It’s called incentive.
Intellectual property rights are the fertile soil that allowed the tree to grow in the first place — and to thrive. To borrow an over-used adjective from the world of global climate change — we must protect “sustainable” innovation.
Jamie Love and Company may very well say, “A world without patents, amen.” And they’re right, because minus pharmaceutical IPR we’d all better start saying our prayers — because that’s the only way we’re going to battle disease and improve the health of our global fraternity.
If the IGWG succeeds, pharmaceutical innovation dies. And that’s a Silent Spring we cannot afford.
Author: Peter Pitts
Source: DrugWonks
ViroStatics Establishes Scientific Advisory Board for HIV Development Program
Last Updated on Wednesday, 27 February 2008 05:11 Written by Fred Wednesday, 27 February 2008 05:11
SASSARI, Italy & PRINCETON, N.J. – (Business Wire) ViroStatics, srl, a privately-held pharmaceutical company focused on the discovery and development of combination therapeutics in HIV/AIDS, virology, and other chronic diseases, today announced the formation of a Scientific Advisory Board (SAB). Chaired by Daniel Kuritzkes, MD, Director of AIDS Research, Brigham & Women’s Hospital in Boston, the Board will provide the Company with valuable assistance in determining and managing the scientific mission as well as the prioritization and operation of its scientific and clinical activities.“Our Scientific Advisory Board is composed of six internationally renowned experts in the fields of clinical research, pharmacology, and immunology,†said Franco Lori, MD, President and CEO of Virostatics. “Each of them has made significant contributions to the scientific understanding of HIV/AIDS. We are confident that our Board members will provide ViroStatics with important insight and guidance as we continue the Phase II development of our lead combination product in HIV, VS411, as well as continuing our aggressive screening of new compounds to combat the global HIV/AIDS pandemic.â€
The members of the Virostatics SAB are:
Daniel R. Kuritzkes, MD
Scientific Advisory Board Chairman
Daniel R. Kuritzkes, MD is Professor of Medicine at Harvard Medical School and Director of AIDS Research, Brigham & Women’s Hospital in Boston. He is Head of the Section of Retroviral Therapeutics for the Harvard Division of AIDS. Dr. Kuritzkes also serves as Vice Chair of the Executive Committee of the Adult AIDS Clinical Trials Group (ACTG) and is the Principal Investigator of the Harvard Adult AIDS Clinical Trials Unit.
Charles Flexner, MD
Charles Flexner, MD is Professor of Medicine in the Divisions of Clinical Pharmacology and Infectious Diseases, and Professor of Pharmacology and Molecular Sciences at the Johns Hopkins University School of Medicine in Baltimore. In addition, Dr. Flexner is Professor of International Health (Bloomberg School of Public Health) and Principal Investigator for the Johns Hopkins University AIDS Clinical Trials Unit.
Roy M. Gulick, MD, MPH
Roy “Trip” Gulick, MD, MPH, is Professor of Medicine at Weill Medical College of Cornell University in New York and Director of the Cornell HIV Clinical Trials Unit. He also is a Board Member of the International AIDS Society-USA, and a member of the Panel on Clinical Practices for Treatment of HIV Infection of the U.S. Department of Health and Human Services. Within the ACTG, he chairs the Steering Committee of the Optimization of Antiretroviral Therapy Committee.
Michael M. Lederman, MD
Michael M. Lederman, MD is the Scott R. Inkley Professor of Medicine and Professor of Molecular Biology/Microbiology, Pathology and Biomedical Ethics at the Case Western Reserve University in Cleveland where he is director of the Center for AIDS Research. He is a member of the American Association of Immunologists, the Infectious Diseases Society of America, and the HIV Medicine Association.
Guido Silvestri, MD
Guido Silvestri, MD is an Associate Professor of Pathology & Laboratory Medicine at the Hospital of the University of Pennsylvania, where he also serves as Director of Clinical Virology. Dr. Silvestri directs an NIH-funded research laboratory that conducts studies of AIDS pathogenesis and vaccines. Dr. Silvestri’s work has elucidated the mechanisms by which SIV infection of natural hosts is not followed by progression to AIDS, thus providing important insights on how HIV infection causes immunodeficiency in humans.
Mark A. Wainberg, PhD
Dr. Mark A. Wainberg is Director of the McGill University AIDS Centre and Professor of Medicine and of Microbiology at McGill University in Montreal, Canada. Dr. Wainberg, an internationally recognized scientist in the field of HIV/AIDS, has made many contributions to the study of the reverse transcriptase of HIV-1 in regard to basic mechanisms of action, inhibition by anti-viral drugs, drug resistance, and HIV replication. He served as President of the International AIDS Society between 1998 and 2000 and was Co-Chair of the XVI International AIDS Conference in 2006.
About Virostatics
Virostatics srl, an Italian pharmaceutical company with operations in Sassari and Pavia, Italy and Princeton, NJ, is committed to discovering and developing novel combination therapeutics to address significant medical needs in HIV/AIDS, chronic infections and related fields. The company is developing its lead product, VS411, as a fixed-dose combination of two drugs to not only decrease HIV replication but to also protect and conserve the immune system. VS411 has completed Phase I and is moving into a multinational Phase II development program. Virostatics has developed a proprietary screening methodology to rapidly and efficiently identify cytostatic agents with potential to control the over-stimulation of the immune system that is believed to drive the progression of HIV to AIDS. Virostatics is committed to expanding its pipeline and product portfolio by in-licensing early- and late-stage compounds and exploring co-development opportunities that fit the Company’s expertise in specialty pharmaceuticals and biopharmaceuticals in HIV/AIDS. For more information, visit virostatics.com.
Virostatics srl
Michael Stevens, PharmD
609-987-2305
Chief Development Officer
m.stevens@virostatics.com
Posted under Europe, HIV Research, Press Releases | No Comments
SRI helps develop screening program for AIDS drugs
Last Updated on Tuesday, 5 February 2008 03:45 Written by Fred Tuesday, 5 February 2008 03:45
Research conducted at Birmingham’s Southern Research Institute helped develop a system to identify drugs with the ability to fight the virus that causes AIDS.
Trana Discovery, a North Carolina-based drug discovery technology company, worked with Southern Research to create a screening system to identify drugs that inhibit HIV replication.
The system can be used by pharmaceutical companies to “rapidly and efficiently screen vast libraries of compounds” to help in the treatment of AIDS patients, said Trana CEO Steve Peterson.
Quest for a cure
Last Updated on Thursday, 3 January 2008 02:55 Written by Fred Thursday, 3 January 2008 02:55
In Quest for a Cure, Peter Day reports on whether the US Food and Drug Administration will licence the HIV/AIDS drug Maraviroc.
Maraviroc, a new HIV/AIDS drug was developed by Pfizer – the world’s largest pharmaceutical company – at its vast research and development center located at Sandwich in Kent, on the southeastern tip of England.
In the first two episodes (broadcast last year), the series examined how the drug was discovered – by screening millions of compounds in search of just one with the right efficacy and tested at vast cost, on thousands of volunteers.
In the final episode, the story reaches a climax with the public hearing into maraviroc organised by the US Food and Drug Administration in Washington DC in April this year.
At this extraordinary event, a panel of independent experts hear evidence for and against the drug in question. At the end of the day the panel vote, in public. For the Pfizer scientists it was the climax of years and years of work, involving thousands of people and millions of dollars.
When the result was announced – a unanimous yes vote – the team watching on CCTV back in Sandwich cheered and clapped ; some even shed a tear or two. As one researcher remarked “this doesn’t happen very often…”
The next step should have been a formality, with the expectation that the FDA would ratify the panel’s recommendation a few weeks later, but – surprisingly – it did not.
Posted under Drug Development, Europe, HIV Research, Press Releases | No Comments
AIDS researchers find protein that greatly boosts HIV infection
Last Updated on Tuesday, 18 December 2007 05:04 Written by Fred Tuesday, 18 December 2007 05:04
German AIDS researchers have discovered a protein common in semen that boosts the infectious potential of HIV 100,000-fold – a remarkable finding that may show how the virus can spread through sexual contact and also suggests new strategies to stop the epidemic.
If scientists can find a drug or chemical that blocks these infection-promoting proteins, it would go a long way toward development of a microbicide, a vaginal cream or gel that could protect sex partners against AIDS.
What is catching scientists’ attention is the 100,000-fold increase. “I was so surprised that I did not believe the numbers,” said Dr. Frank Kirchhoff, leader of the University of Ulm laboratory that found the protein. “But we did the experiment multiple times, and the results were always the same.”
The discovery was made possible by advanced techniques in laboratory screening for tiny proteins. There are more than 900 different kinds in human semen, and these proteins in turn break down into smaller molecular chains that also may carry out important biological tasks.
In this case, researchers at the University of Ulm were screening hundreds of different molecules from semen samples in the hope of finding some that naturally blocked HIV, the virus that causes AIDS.
Instead, they stumbled upon protein fragments that do the opposite. The fragments dramatically boost HIV infection by clustering into microscopic rafts that ferry crowds of virus particles to cell surfaces, like landing craft disgorging invaders on a beach.
Their findings were released today in advance of Friday’s publication of the journal Cell.
Although HIV has been understood to be a sexually transmitted disease for a quarter century, relatively little work has been done in analyzing what role semen may play in its transmission. And, it seems, few scientists have spent much time analyzing what Kirchhoff calls “pools” of donated semen. “People haven’t dissected the individual components of semen,” he said.
The latest work is the product of an emerging field in biotechnology called proteomics, the study of the molecular structure and function of proteins.
The new study suggests that scientists may have been missing something very important. “This is one of the most interesting new perspectives on HIV transmission to emerge in years,” said Dr. Warner Greene, director of the Gladstone Institute of Virology and Immunology in San Francisco.
Greene said the work may solve a mystery that has puzzled AIDS researchers – why a virus that appears weakly infectious in laboratory dishes can spread explosively through sexual contact.
When researchers try to infect human cells under a microscope with HIV, it takes between 1,000 and 100,000 particles of the virus to cause a successful infection. That’s weak, as viral infectivity goes. But when the proteins found by Kirchhoff are added to the mix, it is possible to start a successful infection with as few as three particles of virus.
If such a weak virus can be turned into a monster by a molecule present in semen, it raises the possibility that knocking that molecule out – or even hobbling it – could make HIV suddenly much more difficult to spread.
Greene is so enthusiastic about this discovery that he has started a project to find ways of blocking the protein. But he concedes that this search will not be quick or easy.
Dr. Tony Fauci, director of the National Institute for Allergy and Infectious Diseases, said the science behind the German study is impressive, but the laboratory dish findings are a long way from producing a practical solution for people. “It is a surprising finding, but I would be cautious about how important this is going to be,” he said.
Fauci also noted that sexual transmission is only one route of HIV infection. Women can pass the virus to their newborns with breast milk, where presumably no similar HIV-promoting proteins exist. It is also clear that other factors, such as genital ulcers caused by diseases including herpes and syphilis, have a well-documented role in enhancing transmission of the virus.
University of Pittsburgh researcher Dr. Ian McGowan, a principal investigator with the Microbicide Trials Network – which coordinates National Institutes of Health studies in that field – was skeptical that the results would lead to any immediate advances in HIV prevention. He noted that a new generation of microbicide made from AIDS drugs has already blocked the virus in test tube studies and is headed for clinical trials, so there may be no advantage to a new approach targeting the infection-promoting proteins.
What happens in the laboratory, he said, may have little bearing on what works in people. “New compounds may block HIV in the test tube or in blood cells, but in reality these (microbicide) products need to be used intra-vaginally or intra-rectally,” he said.
The latest findings, however, are almost certain to prompt a closer look at the role these proteins play in HIV transmission. UCSF virologist Dr. Jay Levy, one of the first to isolate the AIDS virus in the early years of the epidemic, said studies may now be conducted to see how prevalent the protein is among at-risk populations. One example could be among HIV-positive men who have sex with unprotected partners, who nevertheless remain uninfected. Semen from the infected men could be tested to see if the protein is there, or is somehow naturally blocked.
The German researchers acknowledge that they do not know precisely how or why the protein they found has such a marked effect on HIV infectivity. The tiny rafts of protein fragments are called fibrils. They are created when sections of a large and common protein in semen, known as PAP, break off and cluster.
Fibrils are thought to resemble a loose collection of sticks, and numerous virus particles hitch a ride on them. It is possible that the sticky fibrils themselves attach to cell surfaces and make it easier for their HIV passengers to gain entry.
One of the more curious twists about the findings is a link between the HIV-enhancing fibrils and Alzheimer’s disease. These fibrils are structurally very similar to biological debris that clutters up the brain tissue of Alzheimer’s patients. It was a totally unrelated finding, that the amyloid fibrils in the brain disease seemed to promote HIV, that led researchers to suspect it when screens found similar fibrils in semen.
Kirchhoff named the structures Semen-Derived Enhancer of Virus Infection, or SEVI.
The discovery is the second major finding of note in HIV research by Kirchhoff’s laboratory. In April, researchers there used a somewhat similar screening process to find in the waste products from kidney dialysis a human protein that appears to naturally block many strains of HIV.
Posted under Drug Development, Europe, Europe, HIV Research, Press Releases | No Comments
Gossypol Biological Properties
Last Updated on Monday, 22 October 2007 11:34 Written by admin Monday, 22 October 2007 11:33
Gossypol:
- is a polyphenolic aldehyde that permeates cells and acts as an inhibitor for several dehydrogenase enzymes.
- is antimalarial being the selective inhibitor of Plasmodium falciparum (pfLDH over hLDHs), an essential enzyme for energy generation within malarial parasite.
- posesses proapoptotic properties, probably due to the regulation of the Bax and Bcl2.
- reversibly inhibits Calcineurin and binds to calmodulin.
- inhibits replication of the HIV-1 virus.
- an effective protein kinase C inhibitor.
Posted under Cancer Research, HIV Research, Medicinal Chemistry, Natural Products, New Products, Reagents, Veterinary Research | No Comments
FDA approves Merck’s Isentress for HIV
Last Updated on Thursday, 18 October 2007 01:22 Written by admin Thursday, 18 October 2007 01:22
Oct 16, 2007 (Datamonitor via COMTEX) — MRK | charts | news | PowerRating — The FDA has granted Merck & Co.’s Isentress tablets accelerated approval for use in combination with other antiretroviral agents for the treatment of HIV-1 infection in treatment-experienced adult patients who have evidence of viral replication and HIV-1 strains resistant to multiple antiretroviral agents.
This indication is based on analyses of plasma HIV-1 RNA levels up through 24 weeks in two controlled studies of Isentress (raltegravir). These studies were conducted in clinically advanced, three-class antiretroviral treatment-experienced adults.
The use of other active agents with Isentress is associated with a greater likelihood of treatment response.
The drug’s safety and efficacy have not been established in treatment-naive adult patients or pediatric patients. Longer-term data will be required before the FDA can consider traditional approval for Isentress.
Peter Kim, president of Merck Research Laboratories, said: “Isentress is the first drug in a new class of antiretroviral therapies that when used in combination with other effective antiretroviral agents, offers a new opportunity for individuals whose HIV infection is no longer adequately controlled and whose virus is resistant to multiple agents. This approval builds on our longstanding commitment to research in HIV/AIDS, with the goal of making truly differentiated therapies available to patients in need.”
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Soya bean can help fight dreaded HIV, claims research
Last Updated on Thursday, 18 October 2007 01:21 Written by admin Thursday, 18 October 2007 01:21
SOYA BEAN is packed with powerful punch. It not only has the power to absorb the heavy metals from the mother earth but also has the potential as a bio-fuel besides possessing the quality to fight the dreaded HIV.
Realising the potential Naithani Plant Genetics Laboratory of Botany Department, Allahabad University (AU), has approached the Council for Scientific and Industrial Research (CISR), New Delhi, to fund its project to carry out further researches on soya bean.
“Soya bean, scientifically called as Glycine max, is a food legume with 18-23 per cent oil content and 38-44 per cent protein content.
It has been found as the richest source of protein after meat and egg. Soya bean can also absorb a considerable amount of heavy metals like cadmium and lead from contaminated soil, acting as Phytoremediator. It has the ability to absorb the deadly poisonous TNT (Tri Nitro Toluene) which is an explosive, present in higher amounts in the soils around factories involved in the production of explosives”, said Dr Girijesh Kumar of Botany Department, AU.
“It was interesting to note that there was no effect in the seed oil content of the plants grown in the contaminated area. For this unique property soya bean can be used for reclaiming soils damaged by industrial wastes. Oil from these plants can be used as bio-diesel by a process called transesterification. Hence, it can be an alternative to petroleum-based fuels, which are dwindling at an alarming rate,” added Dr Kumar.
Dr Kumar said that continuous efforts were being made to raise better mutant genes through mutation breeding. A successful experimentation has been done to study the accumulation of heavy metals in different parts of plants without any damage to the quality of protein and oil content. By using mutation as tool, efforts are on to increase the oil content which could be used as an alternative for petroleum-based fuels. Tetraloids have successfully been raised which doubled the size of the seed.
Since, soya bean is the cheapest source of vegetable protein and its contains many beneficial compounds like lecithin’s, phyto-sterols, fibros, saponins etc which help in cancer prevention, cholesterol reduction and prevention of cardio-vascular diseases, in combating osteoporosis and it is also good for diabetes, therefore it has been selected by us for considerable improvement through mutation breeding. Very few people know that it contains a compound called ‘Saponin B1′ which has anti-HIV properties.
Dr Kumar said that despite so many important features the soya bean farming and its use has not gained popularity owing to its taste. The factor behind it is the presence of linolenic acid in the soya bean.
The experiments are underway to decrease the lenolenic acid level in soya bean for making it more popular. The reduction in linolenic acid content of soya bean by mutation through gamma-rays has given positive results. The modified soya bean was much tasty and the durability of the food cooked by soya bean oil has also been found to have increased. The modified soya bean would also simplify the oil extraction process thus reducing the cost of its oil.
Dr Kumar informed that along with research scholar Priyanka Rai, they have already begun work on the project and set to go full steam once the green signal is received from the CSIR.
Posted under Asia, HIV Research, Press Releases | No Comments
Immune cells fighting chronic infections become progressively ‘exhausted,’ ineffective
Last Updated on Thursday, 18 October 2007 01:17 Written by admin Thursday, 18 October 2007 01:17
(PHILADELPHIA) – A new study of immune cells battling a chronic viral infection shows that the cells, called T cells, become exhausted by the fight in specific ways, undergoing profound changes that make them progressively less effective over time.
The findings also point to interventions that would reverse the changes, suggesting that novel therapies could be developed to reinvigorate T cells that become depleted in their struggle against a virus. Alternatively, strategies that would intentionally trigger the immune-dampening mechanisms explored in the study could prove useful in countering autoimmune disorders in which the immune system is inappropriately activated.
Although the experiments were conducted in mice, the problem of T-cell exhaustion has also been identified in HIV, hepatitis B, and hepatitis C infections in humans, as well as some cancers, such as melanoma. A report on the study results appears in the current issue of Immunity, published online October 18.
“We knew that T cells responding to chronic infections become progressively compromised in many of their functional properties,†says E. John Wherry, Ph.D., an assistant professor in the Immunology Program at The Wistar Institute and lead author on the Immunity study. “Put simply, the T cells become exhausted as time passes. What we wanted to learn in our study was what the specific problems were with these cells and whether their depleted state could be reversed.â€
Using a technique called gene-expression profiling, Wherry and his colleagues identified 490 genes whose activity in T cells is altered during a chronic viral infection. Closer study at different time points using a 22-gene subset of the larger group of genes provided molecular signatures of progressive T-cell exhaustion. Only a few changes in the activity of the 22 genes were seen at the end of the first week of infection, increasing to 9 differences at two weeks, 18 differences at one month, and 21 differences at two months. At the end of two months, T cells contending with a chronic infection were sluggish metabolically and immunologically unresponsive to stimulus.
One gene identified as playing a central role in this process is called PD-1, which codes for an inhibitory receptor on the surface of the T cells. By blocking PD-1 in vivo, the researchers found they could alleviate T-cell exhaustion, get more functional T cells, and control the infection better.
“Blocking this one pathway partially reverses T-cell exhaustion in some settings, suggesting that we may be able to intervene to reinvigorate depleted immune cells,†says Wherry. “The T cells undergo many changes during chronic infections, however, so that it will be important to learn how to treat them for multiple problems.â€
Wherry notes that the mechanisms involved in T-cell exhaustion also have important upsides.
“The flip side of this process is that the immune system has developed an effective way to turn off its response to a stimulus – which is exactly what one wants to do in the case of autoimmunity,†he says.
He points out, too, that the energy outlay during the acute phase of the immune system’s response to an infection is enormous – and fundamentally unsustainable.
“In the first week of an immune response to a virus, T cells can divide every four to six hours, as fast as any other mammalian cell at any time during development,†Wherry says. “In terms of their rate of division, T cells are in the same category as cells in the earliest stages of embryonic development. The energy involved in doing this is extraordinary, and the body can’t keep that up for an extended period of time.â€
###
Wherry is the lead author on the Immunity study, as well as the corresponding author. The senior author was Rafi Ahmed at the Emory University School of Medicine. The co-authors on the study are; Sang-Jun Ha, Surojit Sarkar, Vandana Kalia, and Shruti Subramaniam at Emory; Susan M. Kaech at Yale University Medical School; W. Nicholas Haining at the Dana-Farber Cancer Institute; Joseph N. Blattman at the Fred Hutchinson Cancer Research Center; and Daniel L. Barber at National Institutes of Health.
Funding for the research was provided by the National Institutes of Health, the Foundation for NIH, the Bill and Melinda Gates Foundation, the Elizabeth Glaser Pediatric AIDS Foundation, the Cancer Research Institute, and the Commonwealth Universal Research Enhancement Program of the Pennsylvania Department of Health.
The Wistar Institute is an international leader in biomedical research with special expertise in cancer research and vaccine development. Founded in 1892 as the first independent nonprofit biomedical research institute in the country, Wistar has long held the prestigious Cancer Center designation from the National Cancer Institute. Discoveries at Wistar led to the creation of the rubella vaccine that eradicated the disease in the United States, human rabies vaccines used worldwide, and a new rotavirus vaccine approved in 2006. Today, Wistar is home to preeminent research programs studying skin cancer, lung cancer, and brain tumors. Wistar Institute Vaccine Center scientists are creating new vaccines against pandemic influenza, HIV, and other diseases threatening global health. The Institute works actively to transfer its inventions to the commercial sector to ensure that research advances move from the laboratory to the clinic as quickly as possible. The Wistar Institute: Today’s Discoveries – Tomorrow’s Cures. On the web at www.wistar.org.
Posted under HIV Research, North America, Press Releases | No Comments
CLC bio joins $2.5M research project on HIV, bird flu, and other RNA-based diseases
Last Updated on Friday, 4 May 2007 07:24 Written by admin Friday, 4 May 2007 07:24
Aarhus Denmark, April 30, 2007 — CLC bio, the IT University of Copenhagen, and the Department of Molecular Biology at the interdisciplinary nano science centre (iNANO) of University of Aarhus are proud to announce that the Danish Council for Strategic Research has approved to fund the ambitious and ground-breaking research project PC Mini Grids for Prediction of Viral RNA Structure and Evolution.
Professor at the Department of Molecular Biology at University of Aarhus iNANO center, Jørgen Kjems, states:
“Being part of this research project and collaborating with the top scientists from IT University of Copenhagen and CLC bio will provide us with innovative and valuable tools as well as input for new and ground-breaking research into RNA-based diseases. We are thrilled to be a part of this interdisciplinary research project, and have great expectations of the outcome.”
The project aims at designing a collaborative, peer-to-peer software architecture for distributed bioinformatics algorithms, to make research into RNA-based diseases like HIV, SARS, and bird flu faster and more efficient than with current approaches. An important part of the project is to develop better and more user-friendly bioinformatics software for theoretical analysis of RNA available for conventional biology laboratories.
Detailed search and analyses on large amounts of data and time consuming calculations are significant components when doing research in RNA-based diseases. Work efficiency is enhanced with the development of novel software systems, which utilize ordinary workstation computers for analysis, and by improving the user-friendliness and robustness of such distributed parallel computing. This implies such analyses can be performed by non-technical persons, including biologists working in the laboratory. In other words: by developing this kind of solution, this project will dramatically help scientists and researchers worldwide get better RNA-research results in less time, through a simple graphical user interface on a standard computer.
The project will take four years and the total costs amount to 2.5 million USD of which half is funded by the Danish Council for Strategic Research and the other half is co-financed by the three parties involved.
An interesting feature about the project is the involvement of different fields of science. The project is truly interdisciplinary by involving researchers from computer science, bioinformatics, molecular biology, and nano technology.
With the participation in this research project, CLC bio takes an important step toward assuring that CLC RNA Workbench – the upcoming bioinformatics software package for advanced RNA sequence analysis – will continuously be ahead of competing products when it comes to user-friendliness, scientific level, and innovative use of the latest IT technology.
About CLC bio
CLC bio is the world’s leading full-service bioinformatics solution provider, solely focusing on the development of bioinformatics: software, hardware, data analysis, and custom-designed bioinformatics algorithms. CLC bio is an Apple solution provider and value added reseller.
CLC bio’s mission is to be among the most innovative bioinformatics companies in the 21st century. This is realized through:
Development of bioinformatics software and hardware based on the latest scientific findings
User-friendly, integrated and intuitive software solutions
Continuous focus on customer needs and superior customer service
Frequent product updates including the latest IT technologies and bioinformatics algorithms
A flexible IT architecture, enabling customers to buy or develop individualized solutions at a reasonable price.
Posted under Bird Flu Research, ChemInformatics, Europe, HIV Research, Press Releases, Research Projects | No Comments
Setting The Stage To Find Drugs Against SARS
Last Updated on Wednesday, 6 December 2006 08:56 Written by admin Wednesday, 6 December 2006 08:56
Scientists at the U.S. Department of Energy’s Brookhaven National Laboratory have set the stage for the rapid identification of compounds to fight against severe acquired respiratory syndrome (SARS), the atypical pneumonia responsible for about 800 deaths worldwide since first recognized in late 2002. Researchers from Brookhaven’s biology department and the National Synchrotron Light Source (NSLS) characterized a component of the virus that will be the target of new anti-SARS virus drugs. The results were published online by Biochemistry on November 17, 2006.
“Although vaccines against viruses are very effective, vaccines for viruses that mutate rapidly – such as the viruses that cause SARS, AIDS, and bird flu – are much more difficult to obtain,” said Brookhaven biologist Walter Mangel, the lead author of the paper. “Even if a vaccine is available, antiviral agents are important in stopping the spread of highly infectious viruses. If antiviral agents for SARS had been available, they could have been used to contain the outbreak to the initial site of the infection.”
The researchers studied the SARS main proteinase, an enzyme used by the virus during infection to cut newly made viral proteins into gene-sized, functioning pieces. If the proteinase is prevented from working, the virus infection is aborted. Previous studies have revealed that the proteinase is inactive when in the form of single molecules. But once two of those molecules bind together to make what is called a dimer, the enzyme becomes active and is able to play its role in SARS virus reproduction. The challenge for researchers, and the focus of the Brookhaven study, was to determine the concentration at which individual proteinase molecules form active dimers. Knowing this concentration, for which estimates at other laboratories have varied greatly, would allow researchers to search for anti-SARS drugs more efficiently by ensuring that the proteinase used in tests is initially in its active form.
Using three different scientific techniques, including x-ray scattering at the NSLS, the Brookhaven researchers obtained almost identical values for this concentration. Now that this crucial value has been narrowed down to a precise range, researchers can focus on finding compounds that bind to the active form of the enzyme.
“Targets for antiviral drugs must be carefully chosen such that binding to it prevents the virus from reproducing,” Mangel said. “Viral proteinases are excellent targets for antiviral drugs. One reason so many people are surviving the AIDS epidemic is the effectiveness of drugs targeted to the proteinase of human immunodeficiency virus (HIV).”
One way to obtain compounds that bind to a proteinase is via high-throughput screening. Chemical libraries containing tens of thousands of small compounds are available that can be searched for effective drugs against various diseases. Small amounts of a target, e.g., an active viral proteinase, are placed in tiny wells in a plate, and a different compound from the library is added to each well.
To determine whether a compound binds to and inhibits the proteinase, an additional molecule is added that changes color in the presence of an active proteinase. Wells that don’t show a color change therefore contain compounds that inhibit the proteinase, and could be effective antiviral agents. Earlier this year, Mangel’s research group published a procedure on the synthesis of a new compound that changes color in the presence of the active form of the SARS main proteinase.
However, for this screening process to work, the SARS proteinase inserted into the wells has to be active to begin with. Knowing the concentration range for dimer formation will therefore help researchers in their search for a compound to stop the virus. “Now that the stage is set, high-throughput screening can begin,” Mangel said. “Hopefully, it will yield an antiviral agent that can be stockpiled before a virulent strain of the virus reappears.”
###
This research was supported by the Office of Basic Energy Sciences within the U.S. Department of Energy and the National Institutes of Health.
Posted under Bird Flu Research, HIV Research, Medicinal Chemistry, North America, Press Releases | No Comments
Protected: BIT’s 4th Annual Congress of International Drug Discovery Science & Technology 2006 (IDDST-2006)
Last Updated on Monday, 10 April 2006 07:53 Written by iddst2006 Wednesday, 15 February 2006 11:14
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